Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32180 1260 / 0 ATPANK2 pantothenate kinase 2 (.1.2.3) AT1G60440 408 / 7e-135 ATCOAA, ATPANK1 pantothenate kinase 1 (.1) AT2G17320 132 / 4e-33 Uncharacterised conserved protein (UCP030210) (.1) AT4G35360 130 / 2e-32 Uncharacterised conserved protein (UCP030210) (.1) AT2G17340 124 / 2e-30 Uncharacterised conserved protein (UCP030210) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009520 [exp] 1503 / 0 AT4G32180 1510 / 0.0 pantothenate kinase 2 (.1.2.3) Lus10013019 [exp] 460 / 1e-154 AT4G32180 503 / 3e-173 pantothenate kinase 2 (.1.2.3) Lus10029146 [exp] 459 / 5e-154 AT4G32180 500 / 7e-172 pantothenate kinase 2 (.1.2.3) Lus10013846 [exp] 110 / 1e-25 AT4G35360 619 / 0.0 Uncharacterised conserved protein (UCP030210) (.1) Lus10026563 [exp] 100 / 5e-22 AT4G35360 555 / 0.0 Uncharacterised conserved protein (UCP030210) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G077300 [exp] 1352 / 0 AT4G32180 1469 / 0.0 pantothenate kinase 2 (.1.2.3) Potri.012G081600 [exp] 1348 / 0 AT4G32180 1486 / 0.0 pantothenate kinase 2 (.1.2.3) Potri.010G041800 [exp] 490 / 2e-166 AT4G32180 516 / 2e-178 pantothenate kinase 2 (.1.2.3) Potri.008G189500 [exp] 474 / 5e-160 AT4G32180 504 / 7e-174 pantothenate kinase 2 (.1.2.3) Potri.004G207700 [exp] 116 / 8e-28 AT4G35360 580 / 0.0 Uncharacterised conserved protein (UCP030210) (.1) Potri.009G169000 [exp] 114 / 6e-27 AT4G35360 595 / 0.0 Uncharacterised conserved protein (UCP030210) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01937 [flax] [poplar] DUF89 Protein of unknown function DUF89 CL0108 [flax] [poplar] Actin_ATPase PF03630 [flax] [poplar] Fumble Fumble
Representative CDS sequence Show only first row Show all	>Lus10020341 pacid=23144180 polypeptide=Lus10020341 locus=Lus10020341.g ID=Lus10020341.BGIv1.0 annot-version=v1.0 ATGGCTGGATTTAAGGAGGATGGCCGCTCAGTTCTTCTTGGAAGTAACGACACAGCATCATTATTCAAAGAAGCGTCAAAATCTGGCGTTGAAACTGTCA GTAGTAGCAGCAGACAGCTGGAAAAGGCGGCTAGAGAGGAAGGTCAAGGAGGTGGGAGAGGAGGAGAAATGGCTGGTGGTGGGAGTTCGATTCACCGGTC CGGTTCGAGGCCCCAGCTCGACCTTAGCAAGGCTGCAATCCAGGGGAATTTCGAGGAGAAAGATCCCACCATCCTGCTGCCTAACCAGTCTGATGACATT TCCCATTTGGCTCTTGATATTGGAGGATCTCTGATTAAACTTGTGTATTTCTCTAGACATGAAGATCGATCGAGTAATTACAGGAGAGCAATGACACTCC AGGAGAAACTAGGGATTTCGAATGGTAGTCGGAGGAGCTTCCCTGTTCTTGGTGGAAGGCTTCACTTTGTGAAGTTTGAGACGACCAAGATTAATGAGTG CTTGGATTTTATCTCTTCCAAACAGCTTCATTGCTGTGGAGTAGATGCATGTAGTGAGCTTCCTGGAACTGCAGCTAACAGAAATGCTGTGATCAAGGCT ACAGGCGGTGGGGCATATAAGTTCGCTGATCTGTTCAAGGAAAGACTTGGGGTTAGCCTCGACAAGGAAGATGAAATGGACTGTCTAGTGGCGGGAGCCA ATTTTTTGCTCAAGGCTATTCGGCATGAAGCTTTCACCCACATGGAGGGTCAAAAAGAATTTGTGCAGATTGATGATAATGATCTATTCCCTTATCTTCT AGTAAACATTGGTTCTGGTGTTAGCATGATCAAGGTTGACGGAGATGGGAAGTTTGAGCGTGTCAGCGGGACAAATGTCGGTGGTGGTACATATTGGGGA TTGGGGAAGCTGTTGACCAAGTGCAAGAGCTTTGATGAGTTGCTGGAGCTGAGCCAAAGAGGAGACAATAGCACGATCGATATGCTTGTTGGTGACATTT ATGGTGGCACGGATTACAATAAGATTGGTCTCTCTGCATCAACCATTGCATCTAGTTTTGGTAAGGCGATTTCCGACAAGAAGGAACTTGAAGACTACAG GCCTGAAGATATTTCTCTGTCTCTTCTACGGATGATTTCTTACAATATCGGGCAGATTTCATATTTGAATGCACTTCGATTTGGACTTAAGCGCATCTTT TTCGGTGGTTTCTTTATAAGAGGTCATGCTTATACTATGGACACTATATCTTTTGCTGTTCAGTTCTGGTCCAAAGGAGAAATGCAAGCTATGTTTCTGC GACACGAAGGGTTTCTTGGAGCGTTAGGGGCGTTTATGAGCTACGAGAAGCACGGTCTAGATGACTTGATGGTTCATCAGTTGGTTGAAAGATTCCCCAT GGGAGCACCATATACAGGCGGAAAGATTCATGGACCACCACTCGGACTGTGTGCTCTTAGTACCTTTCTTCTTGAGGAATGGCCATGGAAAAAGGTGCAC AAAATTTCGTGGATGGAGAAGTTTGTGCTGAAAGGAACTGAGATTATTGCACCTGTGCCAATGGCTCCCGGAGGAACTACTGGGCTTGGTGGCTTTGAGG TTCCTTCCTCAAAAGGAGGTACACTGCGATCTGATGCGAGTGCACTCAACGTCGGGGTCCTCCATCTCGTACCGACTTTGGAGGTGTTTCCCCTGTTAGC AGACTTGAAAACGACATGTTCATTCTGTTCTGTGTATCTATGCATTTCGCTGACTGCTGCATCGTGTGCGAACAGGTATGAGCCCAACACCATTGACCTC TCTGATCACAACGAGTTGGAGTACTGGTTCACCGTTCTGTCTGAGCATATGCCCGATCTCGTTGATAAGGCAGTAGCAAGTGAGGGAGGAACTGATGATG CAAAACGAAGGGGTGATGCTTTTGCTCGTGCATTTTCTGCTCACTTGGCAAGGTTGATGGAAGAACCTGCTGCATATGGAAAGTTAGGATTGGCCAATCT TTTGGAGCTAAGAGAAGAGTGTCTGAGAGAGTTTCAGTTCGTCGATGTCTATAGAAGCATTAAACAGAGGGAAAATGAAGCGTCGCTTGCTGTGCTACCT GACCTATTAATGGAGCTTGATAGTATGACAGAGGAGACACGGTTGCTTACCTTAATTGAGGGAGTTCTAGCTGCTAACATATTCGACTGGGGATCTCGAG CCTGTGTGGATCTCTACCATAAAGGAACCATAATTGAGATCTACAGAATGAGTCGCAACAAAATGCAAAGACCTTGGCGGGTGGATGATTTTGATCTCTT CAAAGAGAGAATGTTGGGTTCTGGAGATAAGAAGCCTCTTCCACACAAGAGAGCTTTGCTTTTTGTGGACAACTCAGGTGCTGACATTGTTCTAGGAATG CTTCCTTTGGCGAGGGAACTCCTTCGCCGTGGAACTGAGGTAGTCTTCGTAGTTTTGTTTTGTTGCAACGTCGCAAAAAACGAACTGGAACTGACACGTG TGCAGGTTGTTTTGGTTGCAAACTCTCTTCCTGCTCTGAATGATGTAACTGCCATGGAGGTTCCTGACATTGTTGCTGAGGCTGCAAAGCACTGCGACAT TCTTCGGAGAGCTGCCGAAGCAGGAGGGCTACTAGTGGACGCAATGATCAACAGCTCCGACGGATCGAAAGAGAACTCACCGTCGGTACCGTTAATGGTT GTTCTTTGA
AA sequence Show only first row Show all	>Lus10020341 pacid=23144180 polypeptide=Lus10020341 locus=Lus10020341.g ID=Lus10020341.BGIv1.0 annot-version=v1.0 MAGFKEDGRSVLLGSNDTASLFKEASKSGVETVSSSSRQLEKAAREEGQGGGRGGEMAGGGSSIHRSGSRPQLDLSKAAIQGNFEEKDPTILLPNQSDDI SHLALDIGGSLIKLVYFSRHEDRSSNYRRAMTLQEKLGISNGSRRSFPVLGGRLHFVKFETTKINECLDFISSKQLHCCGVDACSELPGTAANRNAVIKA TGGGAYKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDDNDLFPYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWG LGKLLTKCKSFDELLELSQRGDNSTIDMLVGDIYGGTDYNKIGLSASTIASSFGKAISDKKELEDYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIF FGGFFIRGHAYTMDTISFAVQFWSKGEMQAMFLRHEGFLGALGAFMSYEKHGLDDLMVHQLVERFPMGAPYTGGKIHGPPLGLCALSTFLLEEWPWKKVH KISWMEKFVLKGTEIIAPVPMAPGGTTGLGGFEVPSSKGGTLRSDASALNVGVLHLVPTLEVFPLLADLKTTCSFCSVYLCISLTAASCANRYEPNTIDL SDHNELEYWFTVLSEHMPDLVDKAVASEGGTDDAKRRGDAFARAFSAHLARLMEEPAAYGKLGLANLLELREECLREFQFVDVYRSIKQRENEASLAVLP DLLMELDSMTEETRLLTLIEGVLAANIFDWGSRACVDLYHKGTIIEIYRMSRNKMQRPWRVDDFDLFKERMLGSGDKKPLPHKRALLFVDNSGADIVLGM LPLARELLRRGTEVVFVVLFCCNVAKNELELTRVQVVLVANSLPALNDVTAMEVPDIVAEAAKHCDILRRAAEAGGLLVDAMINSSDGSKENSPSVPLMV VL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10020341 [exp]	0	1
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10001979 [exp]	4.0	0.8013
AT2G05590			TLD-domain containing nucleola...		Lus10014476 [exp]	9.3	0.7559
AT1G25240			ENTH/VHS/GAT family protein (....		Lus10019132 [exp]	12.4	0.7085
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10011011 [exp]	14.8	0.7389
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10031927 [exp]	20.8	0.5987
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10018354 [exp]	23.9	0.7372
AT2G42320			nucleolar protein gar2-related...		Lus10011304 [exp]	26.8	0.7394
AT5G58510			unknown protein		Lus10031851 [exp]	28.0	0.7036
AT4G36760		ATAPP1	ARABIDOPSIS THALIANA AMINOPEPT...		Lus10041716 [exp]	33.8	0.7005
AT1G17820			Putative integral membrane pro...		Lus10040647 [exp]	38.0	0.7286

Compare expression of checked genes

Lus10020341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.