Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03630 451 / 5e-158 CS26 cysteine synthase 26 (.1) AT3G59760 391 / 2e-134 ATCS-C, OASC ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) AT2G43750 384 / 5e-132 CPACS1, ATCS-B, OASB CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) AT4G14880 368 / 1e-126 OLD3, CYTACS1, OASA1, ATCYS-3A ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) AT3G22460 360 / 7e-124 OASA2 O-acetylserine (thiol) lyase (OAS-TL) isoform A2 (.1) AT3G04940 347 / 3e-118 ATCYSD1 cysteine synthase D1 (.1) AT5G28020 324 / 2e-109 ATCYSD2 cysteine synthase D2 (.1.2.3.4.5.6) AT5G28030 319 / 2e-107 DES1 L-cysteine desulfhydrase 1 (.1.2) AT3G61440 315 / 4e-105 ATCYSC1, ARATH;BSAS3;1 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) AT1G55880 101 / 1e-23 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009521 [exp] 599 / 0 AT3G03630 432 / 2e-150 cysteine synthase 26 (.1) Lus10027056 [exp] 387 / 4e-133 AT3G59760 533 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10025589 [exp] 385 / 4e-132 AT3G59760 536 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10015947 [exp] 365 / 3e-125 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10019003 [exp] 363 / 1e-124 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10019002 [exp] 360 / 1e-123 AT4G14880 461 / 2e-164 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10014765 [exp] 319 / 1e-106 AT3G61440 577 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Lus10004118 [exp] 277 / 3e-91 AT3G04940 375 / 3e-131 cysteine synthase D1 (.1) Lus10036370 [exp] 278 / 5e-91 AT3G61440 471 / 8e-168 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G045800 [exp] 461 / 4e-162 AT3G03630 441 / 5e-154 cysteine synthase 26 (.1) Potri.013G127800 [exp] 397 / 4e-137 AT2G43750 516 / 0.0 CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) Potri.008G153300 [exp] 372 / 4e-128 AT4G14880 482 / 6e-173 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048700 [exp] 367 / 2e-126 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048400 [exp] 365 / 1e-125 AT4G14880 504 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.013G035500 [exp] 358 / 1e-122 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.013G035200 [exp] 353 / 1e-120 AT4G14880 423 / 2e-149 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048066 [exp] 352 / 3e-120 AT3G04940 409 / 3e-144 cysteine synthase D1 (.1) Potri.005G048132 [exp] 350 / 2e-119 AT3G04940 402 / 5e-141 cysteine synthase D1 (.1) Potri.002G160800 [exp] 327 / 8e-110 AT3G61440 570 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00291 [flax] [poplar] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10020342 pacid=23144119 polypeptide=Lus10020342 locus=Lus10020342.g ID=Lus10020342.BGIv1.0 annot-version=v1.0 ATGGCGCTTTCTTCAGCTTCTTCTCCTTCTCTCCTTCTCCCACCTTCCATTTCCGCTTCTCCAGCACGTAAATGGGTTTTTTCATTCTCCACGAACTCCT CCGTCTTCGCTTCTCCGCAGCTCTATCTCGCTTGGAAACGTCACGGTTGGACGACGGCTGTGCGTGCTTCTAAAACGAAGTCTCCGCTGATGCAAGTCTC ACCGCCGGCGAAAGATAAGGAGAAAAAAGGAGACGGAGGCGGTAGCATAACCGCCGGAGACGAAGAGCTGGATTATGTTGACATCGCAGATGACGTCACG CAGTTGATCGGGTGCACACCGATGATATACCTTAACAAAGTAACCAAGGACTGTGTGGCCAACGTAGCTGCAAAGCTTGAATCCATGGAGCCTTGCAGAA GTGTCAAGGATAGTATGATTTGTGAAGCGGAGGAAAATGGAAGGATTTCTCCGGGAAAGAGTATTCTTGTCGAACCAACAACTGGGAATACTGGACTGGG TATTGCATTTGTTGCTGCAGCTAAGGGATATAAAGTAATTGTTACCATGCCCGCATCACTAGATCTCGAGAGGAGGGTTCTTTTGCGAGCTTTTGGAGCA GAAATTGTTTTGACGAATCCAGAAAAGGGTCTGAAAGGCGCTGTTGATAAAGCTGAAGAAATTGCTAAAAGAACACCTAATGCATACATGTTTCGACAGT TTGACAACTCAGCTAATGTGCAGATACACTATGAAACAACGGGACCAGAGATATGGGAGGATACTTTGGGCAACGTTGACATATTTGTTGCTGGAATTGG AACAGGGGGTACTGTTACAGGAGCTGGTCGTTTCTTGAAAATGATGAACAAAAATATTAAGGTAGTCGGTGTAGAGCCTGCCGAGAGGAGTGTAGTCTCA GGACAACACAGAGGTTATATCCCCAGTATCCTGGATATCAAGTTGCTAGATGAGGTTATCAAGATCACGAGCGATGAAGCGATTGAGATGGCGAGGAGAT TGGCTTTGGAAGAAGGCTTGCTGGTTGGGATATCATCAGGAGCTGCCGCTGCTGCAGCAATTACTTTAGGAAAAAGGCCCGAGAATGTTGGGAAACTTAT AACAGTAATATTTCCAAGCTTTGGGGAGAGGTACATTTCTACAGCTCTTTTCCGCTCAACGTTGGACGAAGTACAAAACATGCAGTCATCATAG
AA sequence Show only first row Show all	>Lus10020342 pacid=23144119 polypeptide=Lus10020342 locus=Lus10020342.g ID=Lus10020342.BGIv1.0 annot-version=v1.0 MALSSASSPSLLLPPSISASPARKWVFSFSTNSSVFASPQLYLAWKRHGWTTAVRASKTKSPLMQVSPPAKDKEKKGDGGGSITAGDEELDYVDIADDVT QLIGCTPMIYLNKVTKDCVANVAAKLESMEPCRSVKDSMICEAEENGRISPGKSILVEPTTGNTGLGIAFVAAAKGYKVIVTMPASLDLERRVLLRAFGA EIVLTNPEKGLKGAVDKAEEIAKRTPNAYMFRQFDNSANVQIHYETTGPEIWEDTLGNVDIFVAGIGTGGTVTGAGRFLKMMNKNIKVVGVEPAERSVVS GQHRGYIPSILDIKLLDEVIKITSDEAIEMARRLALEEGLLVGISSGAAAAAAITLGKRPENVGKLITVIFPSFGERYISTALFRSTLDEVQNMQSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03630		CS26	cysteine synthase 26 (.1)		Lus10020342 [exp]	0	1
AT1G63680		APG13, ATMURE, ...	PIGMENT DEFECTIVE EMBRYO 316, ...		Lus10002010 [exp]	2.0	0.9551
AT3G03630		CS26	cysteine synthase 26 (.1)		Lus10009521 [exp]	2.4	0.9574
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Lus10010356 [exp]	2.8	0.9425
AT3G13490		ATKRS-2, OVA5	OVULE ABORTION 5, ARABIDOPSIS ...		Lus10010317 [exp]	3.3	0.9398
AT1G26230		Cpn60beta4	chaperonin-60beta4, TCP-1/cpn6...		Lus10030917 [exp]	3.9	0.9484
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Lus10003578 [exp]	4.9	0.9540
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10042231 [exp]	6.0	0.9437
					Lus10021792 [exp]	6.4	0.9160
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001057 [exp]	6.6	0.9526
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10006962 [exp]	6.9	0.9112

Compare expression of checked genes

Lus10020342 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.