Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03610 428 / 1e-151 ELMO/CED-12 family protein (.1) AT3G60260 269 / 2e-90 ELMO/CED-12 family protein (.1.2.3.4) AT1G03620 268 / 2e-89 ELMO/CED-12 family protein (.1) AT2G44770 258 / 1e-85 ELMO/CED-12 family protein (.1) AT1G67400 255 / 3e-84 ELMO/CED-12 family protein (.1) AT3G43400 166 / 2e-50 ELMO/CED-12 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009523 [exp] 615 / 0 AT3G03610 429 / 4e-152 ELMO/CED-12 family protein (.1) Lus10024285 [exp] 260 / 3e-86 AT2G44770 454 / 1e-163 ELMO/CED-12 family protein (.1) Lus10039805 [exp] 256 / 3e-85 AT1G03620 327 / 3e-114 ELMO/CED-12 family protein (.1) Lus10018574 [exp] 256 / 8e-85 AT1G03620 328 / 7e-114 ELMO/CED-12 family protein (.1) Lus10037017 [exp] 254 / 8e-84 AT1G67400 386 / 2e-136 ELMO/CED-12 family protein (.1) Lus10015790 [exp] 251 / 2e-82 AT1G67400 385 / 4e-136 ELMO/CED-12 family protein (.1) Lus10003841 [exp] 227 / 3e-71 AT2G44770 407 / 2e-142 ELMO/CED-12 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G069000 [exp] 405 / 3e-143 AT3G03610 441 / 6e-157 ELMO/CED-12 family protein (.1) Potri.002G138700 [exp] 261 / 6e-87 AT3G60260 459 / 8e-166 ELMO/CED-12 family protein (.1.2.3.4) Potri.014G049800 [exp] 261 / 6e-87 AT3G60260 434 / 1e-155 ELMO/CED-12 family protein (.1.2.3.4) Potri.010G060700 [exp] 253 / 1e-83 AT1G67400 419 / 1e-149 ELMO/CED-12 family protein (.1) Potri.008G175301 [exp] 244 / 3e-80 AT1G67400 422 / 6e-151 ELMO/CED-12 family protein (.1) Potri.013G136200 [exp] 245 / 2e-79 AT1G03620 322 / 1e-110 ELMO/CED-12 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04727 [flax] [poplar] ELMO_CED12 ELMO/CED-12 family
Representative CDS sequence Show only first row Show all	>Lus10020344 pacid=23144124 polypeptide=Lus10020344 locus=Lus10020344.g ID=Lus10020344.BGIv1.0 annot-version=v1.0 ATGTCAAGAACCTTGAGAAGAAGGCTTCACCATGGGGATATCGACGGAAGACGTAACGAGCGTTACGATGATTCCGGGTTGGATGAGCCTTTACTCGAGC TTTACGATCGACAAATCGAACCAAAAGGGATGTTTGCCGGAGATGTTTGGAATGTTGATAGGACGCTGGACCAGATTCATATCCACTGGACATTCCTCTT TACAACTGTGATTGCCCAGTGGGCTCAATTGCTAGCGAATATTGTCGTCGGTTCAAGATCTTTTATCGAGCGGTTCTTACCTGCTGCATCGGTTCCGGCT GGAACAAATCTTCGTCTGCCTTATCTCAGTGCTTTGCAGGAGGAAAGACTTACCAATTTGCAGCGGCGACTTCGAGTTCCATTTGATGGTTCACTCTTGG AGCATCAAGACGCGCTTAAACAACTGTGGAGGTTGGCTTATCCTGATAGGCAGCTCCCAGCACTTAAATCAGAGCTTTGGAAAGAGATGGGTTGGCAAGG TTGCGATCCTTCGACAGATTTCCGGGGTGGAGGATACATTTCGCTGGAGAACCTTATTTACTTCGCAACAACATATCCGAACTCGTTCCAGAGACTGCTA CACAAAAAAGACGGTAAAAGAGCCGAATGGGAGTACCCCTTTGCAGTAGCTGGGATACACATTTCTTTCACTCTGGCACAAATGCTGGATCTTCAAAAGG GGAAGCCGAAAACACAAGCTGGAATCCGGTTTGTGGAAATGCTGGAGTGCGACCAGATGGCGTTTGACAACCTCTACTGCGTTGCGTTCCAGATGATGGA CGCTCAGTGGCTCGCGAAGCGTGCTTCATATATGGAATTCAACGATGTTATGAAGTCTACAAGGAACCAGTTGGAAAGGGAACTTGTGCTTAAAGATATC CGCTCTGTGAAGGATCTGCCTGCTTACAATTTGCTTTCGGGATAA
AA sequence Show only first row Show all	>Lus10020344 pacid=23144124 polypeptide=Lus10020344 locus=Lus10020344.g ID=Lus10020344.BGIv1.0 annot-version=v1.0 MSRTLRRRLHHGDIDGRRNERYDDSGLDEPLLELYDRQIEPKGMFAGDVWNVDRTLDQIHIHWTFLFTTVIAQWAQLLANIVVGSRSFIERFLPAASVPA GTNLRLPYLSALQEERLTNLQRRLRVPFDGSLLEHQDALKQLWRLAYPDRQLPALKSELWKEMGWQGCDPSTDFRGGGYISLENLIYFATTYPNSFQRLL HKKDGKRAEWEYPFAVAGIHISFTLAQMLDLQKGKPKTQAGIRFVEMLECDQMAFDNLYCVAFQMMDAQWLAKRASYMEFNDVMKSTRNQLERELVLKDI RSVKDLPAYNLLSG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03610			ELMO/CED-12 family protein (.1...		Lus10020344 [exp]	0	1
AT5G23520			smr (Small MutS Related) domai...		Lus10004296 [exp]	3.6	0.8639
AT1G50680	AP2_ERF		AP2/B3 transcription factor fa...		Lus10036282 [exp]	8.8	0.8604
AT1G55280			Lipase/lipooxygenase, PLAT/LH2...		Lus10039181 [exp]	19.4	0.8466
AT3G15358			unknown protein		Lus10015439 [exp]	19.8	0.8197
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Lus10026634 [exp]	22.5	0.8469
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10003669 [exp]	27.2	0.8231
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10016885 [exp]	32.4	0.8452
AT4G35750			SEC14 cytosolic factor family ...		Lus10005640 [exp]	33.3	0.7905
AT3G50160			Plant protein of unknown funct...		Lus10038339 [exp]	34.3	0.7625
AT5G43920			transducin family protein / WD...		Lus10022847 [exp]	34.8	0.8288

Compare expression of checked genes

Lus10020344 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.