Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59480 441 / 8e-158 pfkB-like carbohydrate kinase family protein (.1) AT2G31390 439 / 8e-157 STH pfkB-like carbohydrate kinase family protein (.1) AT1G06020 434 / 6e-155 pfkB-like carbohydrate kinase family protein (.1) AT1G06030 434 / 7e-155 pfkB-like carbohydrate kinase family protein (.1) AT4G10260 348 / 5e-121 pfkB-like carbohydrate kinase family protein (.1) AT1G66430 329 / 9e-113 pfkB-like carbohydrate kinase family protein (.1) AT5G51830 305 / 8e-104 pfkB-like carbohydrate kinase family protein (.1) AT1G50390 223 / 3e-74 pfkB-like carbohydrate kinase family protein (.1) AT3G54090 130 / 7e-35 FLN1 fructokinase-like 1 (.1) AT1G69200 113 / 2e-28 FLN2 fructokinase-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009526 [exp] 514 / 0 AT2G31390 553 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10026865 [exp] 485 / 6e-175 AT3G59480 560 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10013611 [exp] 485 / 7e-175 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028089 [exp] 335 / 1e-116 AT4G10260 452 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Lus10040562 [exp] 326 / 2e-112 AT4G10260 539 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10027401 [exp] 319 / 3e-109 AT5G51830 535 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009126 [exp] 312 / 5e-106 AT1G66430 582 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028517 [exp] 311 / 1e-105 AT1G66430 575 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10031668 [exp] 308 / 6e-105 AT5G51830 522 / 0.0 pfkB-like carbohydrate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G029000 [exp] 451 / 5e-161 AT3G59480 568 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.007G129700 [exp] 431 / 1e-153 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.019G063600 [exp] 342 / 1e-118 AT4G10260 550 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.004G089300 [exp] 341 / 2e-117 AT1G66430 527 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G126300 [exp] 317 / 3e-108 AT1G66430 519 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.015G134900 [exp] 311 / 3e-106 AT5G51830 456 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Potri.012G132700 [exp] 311 / 4e-106 AT5G51830 460 / 1e-163 pfkB-like carbohydrate kinase family protein (.1) Potri.008G097300 [exp] 116 / 2e-29 AT1G69200 598 / 0.0 fructokinase-like 2 (.1) Potri.016G109600 [exp] 111 / 7e-28 AT3G54090 630 / 0.0 fructokinase-like 1 (.1) Potri.014G074125 [exp] 70 / 3e-15 AT5G51830 80 / 7e-19 pfkB-like carbohydrate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF00294 [flax] [poplar] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Lus10020346 pacid=23144108 polypeptide=Lus10020346 locus=Lus10020346.g ID=Lus10020346.BGIv1.0 annot-version=v1.0 ATGCTGGCCGGGATCTTGAAGGAGAACGGCGTGATCTGCGATGGCATCAACTTCGACAAGGGAGCCAGGACCGCCCTCGCCTTCGTCACTCTCAAGGCCG ACGGCGACCGCGAGTTCATGTTCTTCCGCAACCCCAGCGCCGACATGCTCCTCCAGCCCGAGGAGCTCAATCTCGAGCTCATCAGATCTGCCAAAGTTTT CCACTACGGGTCGATAAGCTTGATAGTGGAGCCATGCAGATCGGCACACTTGAAGGCGATGGAGGCCGCAAAGGACGCCGGTGCACTTCTATCGTATGAT CCAAACCTGAGGCTACCTCTGTGGCCTTCCCCTGAAGAGGCTCGTGAGCAGATTCTCAGCATTTGGGACAAGGCGGAGATCATTAAAGTTAGCGATGTCG AGCTTGAGTTCCTCACCGGGAGTGACAAGATCGACGATGCTTCTGCAATGTCCCTCTGGCATGACAACTTGAAGTTGCTCCTTGTCACCCTCGGGGAAAA GGGTTGCAATTACTACACCAAGGGGTTCAACGGAACAGTCGAGGCGTTCCACGTGAACGCGGTGGACACGACAGGAGCCGGTGACTCCTTTGTTGGGGCT CTACTCACCAAGATCGTCGACGACCGGTCTATTCTCGAGGATGAAGCGAGGTTGAAGGAGGCTCTAAGATTCGCAAACGCGTGCGGAGCCATCACAACGA CGAAAAAGGGTGCAATCCCTGCTTTGCCCACCGAAGCCGATGTTCTCTCCTTCATCAAATCGTCCTTCGCTCACTAG
AA sequence Show only first row Show all	>Lus10020346 pacid=23144108 polypeptide=Lus10020346 locus=Lus10020346.g ID=Lus10020346.BGIv1.0 annot-version=v1.0 MLAGILKENGVICDGINFDKGARTALAFVTLKADGDREFMFFRNPSADMLLQPEELNLELIRSAKVFHYGSISLIVEPCRSAHLKAMEAAKDAGALLSYD PNLRLPLWPSPEEAREQILSIWDKAEIIKVSDVELEFLTGSDKIDDASAMSLWHDNLKLLLVTLGEKGCNYYTKGFNGTVEAFHVNAVDTTGAGDSFVGA LLTKIVDDRSILEDEARLKEALRFANACGAITTTKKGAIPALPTEADVLSFIKSSFAH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59480			pfkB-like carbohydrate kinase ...		Lus10020346 [exp]	0	1
AT4G27270			Quinone reductase family prote...		Lus10007612 [exp]	1.7	0.9061
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10011858 [exp]	4.9	0.8937
AT3G16760			Tetratricopeptide repeat (TPR)...		Lus10016826 [exp]	5.5	0.8816
AT1G13970			Protein of unknown function (D...		Lus10026633 [exp]	5.5	0.8492
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Lus10030115 [exp]	5.7	0.8879
AT2G22475		GEM	GL2-EXPRESSION MODULATOR, GRAM...		Lus10035933 [exp]	6.0	0.8568
AT2G45290			Transketolase (.1)		Lus10030283 [exp]	7.9	0.8886
AT3G02360			6-phosphogluconate dehydrogena...		Lus10003043 [exp]	10.7	0.8821
AT2G45290			Transketolase (.1)		Lus10000789 [exp]	12.4	0.8735
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10040475 [exp]	12.8	0.8039

Compare expression of checked genes

Lus10020346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.