Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17560 152 / 5e-47 BolA-like family protein (.1) AT1G55805 59 / 4e-11 BolA-like family protein (.1) AT4G26500 51 / 1e-07 SUFE1, EMB1374, CPSUFE, ATSUFE SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) AT5G09830 37 / 0.0008 BolA-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009527 [exp] 310 / 2e-109 AT5G17560 145 / 2e-44 BolA-like family protein (.1) Lus10032905 [exp] 57 / 6e-10 AT4G26500 380 / 4e-131 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Lus10015605 [exp] 56 / 2e-09 AT4G26500 387 / 2e-133 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Lus10026101 [exp] 52 / 4e-09 AT4G26500 124 / 1e-37 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Lus10002318 [exp] 50 / 2e-08 AT1G55805 119 / 2e-35 BolA-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G074100 [exp] 169 / 5e-54 AT5G17560 156 / 6e-49 BolA-like family protein (.1) Potri.012G036800 [exp] 49 / 5e-08 AT1G55805 130 / 6e-40 BolA-like family protein (.1) Potri.011G165400 [exp] 50 / 2e-07 AT4G26500 404 / 1e-140 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Potri.001G468300 [exp] 45 / 6e-06 AT4G26500 392 / 5e-136 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01722 [flax] [poplar] BolA BolA-like protein
Representative CDS sequence Show only first row Show all	>Lus10020347 pacid=23144162 polypeptide=Lus10020347 locus=Lus10020347.g ID=Lus10020347.BGIv1.0 annot-version=v1.0 ATGGCGAAGACACTAATGGCGCGCCCGCAGATACTATCATCAACAACCACGCACTTCGTCCTCCTCCGCCGCGCTTTACTCTCTTCTTCCCTTCCCTCGC CGATACGGCCATCTGGTTTCTGTACCAGAAGCTCCCAGTTCCGTTCTTACTCCGCGGCGTTCACTCCTCCTCCCAGGACCTCAGGGCTTCAGCTGCAAAG CTCCCGGTGCAAGCTATTCACCTCTGGATTCGGTGCCTCTCCGAATCGCAAGTTCGCCGTTGGAGCTACTCCGGTGAACGATGCTGGCTCCATCGACTCG CCGCTCATGGCGTCCATGAAGGAAAAGATTATGAAGGAGCTAGAGGCAGAGTCGGTAACAGTTAAAGATGCATATGGCGATGGCCGCCATGTGAGCATCG ACGTGGTTTCATCGGTATTCGAAGGGCAGTCGGCAGTGAACAGGCAGAGGATGGTGTACAAAGCCATATGGGAAGAACTTCAAAGCACAGTTCACGCAGT TGACCAGATGACCACCAAGACTCCCTCCGAAGCTTCCAACAAGTGA
AA sequence Show only first row Show all	>Lus10020347 pacid=23144162 polypeptide=Lus10020347 locus=Lus10020347.g ID=Lus10020347.BGIv1.0 annot-version=v1.0 MAKTLMARPQILSSTTTHFVLLRRALLSSSLPSPIRPSGFCTRSSQFRSYSAAFTPPPRTSGLQLQSSRCKLFTSGFGASPNRKFAVGATPVNDAGSIDS PLMASMKEKIMKELEAESVTVKDAYGDGRHVSIDVVSSVFEGQSAVNRQRMVYKAIWEELQSTVHAVDQMTTKTPSEASNK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17560			BolA-like family protein (.1)		Lus10020347 [exp]	0	1
AT5G17560			BolA-like family protein (.1)		Lus10009527 [exp]	1.4	0.8689
AT5G51150			Mitochondrial import inner mem...		Lus10032508 [exp]	1.7	0.8635
AT2G15290		ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...		Lus10019814 [exp]	1.7	0.8957
					Lus10033414 [exp]	3.6	0.8352
AT1G21790			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10025673 [exp]	8.1	0.8558
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10004962 [exp]	8.7	0.8566
AT3G52750		FTSZ2-2	Tubulin/FtsZ family protein (....		Lus10014196 [exp]	8.8	0.8377
AT3G06130			Heavy metal transport/detoxifi...		Lus10021941 [exp]	12.4	0.8439
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10013435 [exp]	17.1	0.8601
AT4G31780		UGT81A1, EMB279...	UDP-glycosyl transferase 81A1,...		Lus10026895 [exp]	21.4	0.8271

Compare expression of checked genes

Lus10020347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.