Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35930 525 / 1e-171 AMP-dependent synthetase and ligase family protein (.1) AT5G36880 76 / 5e-14 ACS acetyl-CoA synthetase (.1.2) AT1G20510 75 / 1e-13 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G30520 73 / 5e-13 AAE14 acyl-activating enzyme 14 (.1) AT4G19010 68 / 2e-11 AMP-dependent synthetase and ligase family protein (.1) AT1G20480 67 / 2e-11 AMP-dependent synthetase and ligase family protein (.1) AT1G77240 61 / 3e-09 AMP-dependent synthetase and ligase family protein (.1) AT1G51680 57 / 3e-08 AT4CL1, 4CL.1, 4CL1 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) AT1G65060 56 / 9e-08 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT1G66120 56 / 1e-07 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009528 [exp] 958 / 0 AT5G35930 1051 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10012280 [exp] 79 / 1e-14 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10036027 [exp] 76 / 4e-14 AT1G30520 436 / 3e-150 acyl-activating enzyme 14 (.1) Lus10015998 [exp] 76 / 5e-14 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10041499 [exp] 71 / 3e-12 AT5G36880 1241 / 0.0 acetyl-CoA synthetase (.1.2) Lus10012595 [exp] 71 / 3e-12 AT5G36880 1246 / 0.0 acetyl-CoA synthetase (.1.2) Lus10037934 [exp] 70 / 4e-12 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2) Lus10024863 [exp] 63 / 9e-12 ND 38 / 4e-04 Lus10038667 [exp] 68 / 2e-11 AT1G20510 449 / 1e-152 OPC-8:0 CoA ligase1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G043800 [exp] 610 / 0 AT5G35930 1127 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.014G140900 [exp] 76 / 7e-14 AT5G36880 1191 / 0.0 acetyl-CoA synthetase (.1.2) Potri.010G230200 [exp] 74 / 3e-13 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.011G164100 [exp] 74 / 3e-13 AT1G30520 645 / 0.0 acyl-activating enzyme 14 (.1) Potri.004G102000 [exp] 69 / 9e-12 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.005G248500 [exp] 67 / 3e-11 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.001G055700 [exp] 67 / 4e-11 AT1G62940 786 / 0.0 acyl-CoA synthetase 5 (.1) Potri.017G112800 [exp] 66 / 7e-11 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.002G012800 [exp] 66 / 8e-11 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.008G031500 [exp] 64 / 2e-10 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme CL0186 [flax] [poplar] Beta_propeller PF01011 [flax] [poplar] PQQ PQQ enzyme repeat
Representative CDS sequence Show only first row Show all	>Lus10020348 pacid=23144032 polypeptide=Lus10020348 locus=Lus10020348.g ID=Lus10020348.BGIv1.0 annot-version=v1.0 ATGGCACCATCAGTGGAGTACATAGTATCTGTGATTTCAGTTTTGAGATGCGGGGAGGCATTTCTGCCGCTTGATCCGGGTTGGCCACGGGAGAGAATAC TGCAAATTGTTTCATCTTCCGGTGTTGATCTCATCGTCACATGTGCGTCATTGTTTGGGGAAGATGGTTCTGTTGATGAGCCTAACTGGCTTGCTGAATC AACTGGATGTTCGATCTTGTTCTTCACCATGAACGAAAGCCTCGAAGGGTGCGGTTTGTCTGCATCTGGGTTGGTTTGGCCTTGCCAGAGGGATTCACAG AGGTCATTCTGCTATCTGATGTATACTTCTGGGTCAACCGGGGTCCCTAAAGGTGTCTGTGGAACTGAGCAAGGTCTGTTGAATCGGTTTCAGTGGATGC ACGAGCTATATCCTGTGGACTGTGAGGAAATTTTGATCTTCAAAGCATCGATAAGCTTTATCGATCATCTGCAAGAATTTCTGTGTGCTATGCTTAGTGG CTGTATAGTGGTTATACCCCCTTTCAGGGAGCTGAAAGACAATCCATCTTCAATCATCAATTTTCTGCAGGCCTATTCAGTTAACAGGCTAACCACTGTT CCTTCACTCATGAAAGAAATTATTCCTGCTTTGCGGTATGATCATAAGTTGAAGATCCAAAATTCATTGAAGTTGCTAATTTTAAGTGGGGAAGTATTTC CTTTGCCCTTATGGAACACGCTTTCTAACTTGCTTTCCAAGACCTCTATTCTGAATATATATGGGAGTACAGAGGTGTCTGGAGACACTACATATTTTGA TTGCAAGAAGTTGCCAATGATGCTGGAAACTGAGGAACTAGGTAGTGTCCCAATTGGTGTGCCTATTTATGGCTGTGCTGTTGAGATTATCGGTGAAGCT GTTGCACCTGATTGGGGAGAAATATTCGTCAGTGGCCTGTGTGTTTCTGCAGGTTACTTTTCACATTTGAGTCCTGTGTCTTCTGACTTGGCTAAGTTGC ATGAGAATTCCATATGTAACTGTTCATCAGATGATTGTGGGGCTCGGTTATTCTACAGAACCGGGGACTGGGGGAAAAAACTCCAATCTGGTGACTTGGT TTTCATGGGAAGAAAAGATCGTACTATAAAAGTGAATGGGCAACGAGTAGCCTTGGAGGAGATTGAAAGTGTACTCAGGGACCATCCTAATATCGTTGAT GCTGCTGTGGTAGCTCGTCTTAATCCAGGACATGATTCATTTCTCACGGCATATCTAGTGCTATCAGAGAAAGATGACTCTCTTCTTAATTTCCAGTCTT CAATCAGGAATTGGATGATTGACAAAGTTCCTCTCTCCAGGATCCCTAACAGCTTCACAGTGGTCAAATCGTTACCCATTTCTTCCAGTGGTAAAGTTGA TTATTCTTCATTAGAGATTTCAAAAGGTTCAACCAAGCATGATCAAACTGAGGGTGGCAATCCTATCAGCAATGACCTCTTGCATGTTATCAAGAAGATA TTTTCAGATGCACTGTCAGTTACAGAGGTTTCCTACTCCATCAAGAGAGAACCTTGTTTACAAGAGTTATGGAAAGTTGATATGGAGTCTTGTGTGGATG CATCACTTCTTCTTGTGTTCAAAGATCGAGAAGTTTACTTGCTTATAGGATCTCATTCACACAAGTTCGCATGCGTTAATGCTAGAAGTATGCTATCGTA TTCATGTGGTGGTTCCGTCACGTGGGAGGTCAAACTAGATGGAAGAGTTGAGTGCTCAGCAGCAATCATCATCGACTATTCTCAGGGGAAGATATACGTT CTCGATCTTTTCAGTGGCAATCTGTGTTGGAAATTCCAAACCAGCGGTGAGGTTAAGTGCCAACCAGTTGTAGACGTGCACAGACACCTAATCTGGTGTG GCTCACATGATCACAACTTGTATGCTCTTGACTATAAAAGCCAGTGCTGCGTTTACAAGCTCGATTGCGGTGGCAGCATCTTTGGGTCTCCTGCCATTGA CGAGGTCCGTAAAGCTCTGTATGTCAGTTCTACCAGTGGTCGTGTAACTGCTCTATCGTTAGAGGGAACCCCATTTCACTGTTTGTGGAAGAGAGAGCTA GATGTACCCATCTTCGGGTCGCTTTCACTCACTCGGATAGTGGGAACGGTTAAATTCAAACCTCATCCTAGTCCTACCCATATTACAGTTGGTGGTCCTG TATTCGCTGGAACCTGCACACCTTCGGTGCTGCCTCGCCAAGCGATTATATGTTCGAGGAATGGAAGTGTCTACTCCCTAGATATGGAAAATGGAGATCA AATCTGGGAACACCAGGTTGGCGGTCCGAAAACCGCGTCTGCTTACATCGACGAACACCTGCAACTGTTCATCCCCGAACCTGTCTCCTCATCATCATCC TCTAGCCGGCCGATCTGTGTGTGTTCGAGTTCCGGAACCATAAACTTGCTGAAGATCAACATTGGAAATCCGGAACATTGCACCACAGTTCAGGAATTTG CACTGTTCGAGCTCCCCGGAAACATATTCTCGTTGCCAGTGATGGTCGGAGGCAGGATATTCGTGGGTTGTAGAGATGATTACGTCCGTTGCATTTCAAT TGATACTGGAGAGTTTGGTAGCGGAACTTGA
AA sequence Show only first row Show all	>Lus10020348 pacid=23144032 polypeptide=Lus10020348 locus=Lus10020348.g ID=Lus10020348.BGIv1.0 annot-version=v1.0 MAPSVEYIVSVISVLRCGEAFLPLDPGWPRERILQIVSSSGVDLIVTCASLFGEDGSVDEPNWLAESTGCSILFFTMNESLEGCGLSASGLVWPCQRDSQ RSFCYLMYTSGSTGVPKGVCGTEQGLLNRFQWMHELYPVDCEEILIFKASISFIDHLQEFLCAMLSGCIVVIPPFRELKDNPSSIINFLQAYSVNRLTTV PSLMKEIIPALRYDHKLKIQNSLKLLILSGEVFPLPLWNTLSNLLSKTSILNIYGSTEVSGDTTYFDCKKLPMMLETEELGSVPIGVPIYGCAVEIIGEA VAPDWGEIFVSGLCVSAGYFSHLSPVSSDLAKLHENSICNCSSDDCGARLFYRTGDWGKKLQSGDLVFMGRKDRTIKVNGQRVALEEIESVLRDHPNIVD AAVVARLNPGHDSFLTAYLVLSEKDDSLLNFQSSIRNWMIDKVPLSRIPNSFTVVKSLPISSSGKVDYSSLEISKGSTKHDQTEGGNPISNDLLHVIKKI FSDALSVTEVSYSIKREPCLQELWKVDMESCVDASLLLVFKDREVYLLIGSHSHKFACVNARSMLSYSCGGSVTWEVKLDGRVECSAAIIIDYSQGKIYV LDLFSGNLCWKFQTSGEVKCQPVVDVHRHLIWCGSHDHNLYALDYKSQCCVYKLDCGGSIFGSPAIDEVRKALYVSSTSGRVTALSLEGTPFHCLWKREL DVPIFGSLSLTRIVGTVKFKPHPSPTHITVGGPVFAGTCTPSVLPRQAIICSRNGSVYSLDMENGDQIWEHQVGGPKTASAYIDEHLQLFIPEPVSSSSS SSRPICVCSSSGTINLLKINIGNPEHCTTVQEFALFELPGNIFSLPVMVGGRIFVGCRDDYVRCISIDTGEFGSGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35930			AMP-dependent synthetase and l...		Lus10020348 [exp]	0	1
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10032146 [exp]	1.4	0.8623
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10020134 [exp]	4.9	0.8460
AT1G72880			Survival protein SurE-like pho...		Lus10015610 [exp]	5.5	0.8130
AT1G57600			MBOAT (membrane bound O-acyl t...		Lus10007951 [exp]	6.6	0.8178
AT2G23140			RING/U-box superfamily protein...		Lus10024899 [exp]	7.0	0.8320
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10033820 [exp]	7.7	0.8410
AT1G18160			Protein kinase superfamily pro...		Lus10027247 [exp]	8.8	0.8344
AT1G73970			unknown protein		Lus10000648 [exp]	12.3	0.8529
AT1G34110			Leucine-rich receptor-like pro...		Lus10017782 [exp]	12.7	0.8466
AT5G14210			Leucine-rich repeat protein ki...		Lus10035225 [exp]	15.3	0.8058

Compare expression of checked genes

Lus10020348 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.