Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72175 261 / 6e-90 RING/U-box protein with domain of unknown function (DUF 1232) (.1) AT1G22510 248 / 8e-85 RING/U-box protein with domain of unknown function (DUF 1232) (.1), RING/U-box protein with domain of unknown function (DUF 1232) (.2) AT4G33940 155 / 2e-47 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009529 [exp] 380 / 7e-137 AT1G72175 261 / 5e-90 RING/U-box protein with domain of unknown function (DUF 1232) (.1) Lus10027921 [exp] 167 / 4e-52 AT4G33940 251 / 3e-84 RING/U-box superfamily protein (.1) Lus10012062 [exp] 164 / 1e-50 AT4G33940 252 / 2e-84 RING/U-box superfamily protein (.1) Lus10014366 [exp] 138 / 6e-39 AT4G33940 189 / 2e-57 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G078800 [exp] 289 / 5e-101 AT1G72175 259 / 3e-89 RING/U-box protein with domain of unknown function (DUF 1232) (.1) Potri.013G105400 [exp] 282 / 3e-98 AT1G72175 263 / 5e-91 RING/U-box protein with domain of unknown function (DUF 1232) (.1) Potri.004G143900 [exp] 152 / 4e-46 AT4G33940 221 / 2e-72 RING/U-box superfamily protein (.1) Potri.014G154600 [exp] 40 / 0.0007 AT1G05120 1058 / 0.0 Helicase protein with RING/U-box domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06803 [flax] [poplar] DUF1232 Protein of unknown function (DUF1232)
Representative CDS sequence Show only first row Show all	>Lus10020349 pacid=23144052 polypeptide=Lus10020349 locus=Lus10020349.g ID=Lus10020349.BGIv1.0 annot-version=v1.0 ATGGACGACGGACCACCGGCGAACGATTGCTGCTCTATTTGCCATGGACACTTCAAGGTCCCTTGCCAGGCCAACTGCTCTCACTGGTTCTGCGGTGATT GTATTATGCTTGTTTGGCAACATGGACCTCCAGTTCAGGCGTGTAAGTGCCCACTCTGTCGTCGGACGATCACGTTATTGGTCCCTGGTGAAGCTGCACT GAGAGAGCGTGATAATGTCGAAGTCTCTGAGGTTCTTGAGAAGGTTCAGAGATACAATCGTATTTACGGTGGAGAAACTTCAGGCCTAATCCAGAGAATG CAAGATCTTCCATTTTTCATCAGGAGGTTGTTCCGAGAGATAATGGATCCGCAAAGATCGCTTCCTCTCGTCGTTAGAGCTCGGGTTTATATTGCAGTGA TATTGAGTGCAATCTACACTCTCAGCCCAATAGACATCATTCCAGAAGGGATACTCGGTATAGTGGGGCTCCTCGACGATGCTCTTATACTGCTCATATG CTTTCTTCACGTTGCTGCAATTTATCGTTCCGTGCTGCATCACCGTCATGGCGGTTCGTGA
AA sequence Show only first row Show all	>Lus10020349 pacid=23144052 polypeptide=Lus10020349 locus=Lus10020349.g ID=Lus10020349.BGIv1.0 annot-version=v1.0 MDDGPPANDCCSICHGHFKVPCQANCSHWFCGDCIMLVWQHGPPVQACKCPLCRRTITLLVPGEAALRERDNVEVSEVLEKVQRYNRIYGGETSGLIQRM QDLPFFIRRLFREIMDPQRSLPLVVRARVYIAVILSAIYTLSPIDIIPEGILGIVGLLDDALILLICFLHVAAIYRSVLHHRHGGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72175			RING/U-box protein with domain...		Lus10020349 [exp]	0	1
AT5G09960			unknown protein		Lus10006803 [exp]	1.0	0.9450
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Lus10030154 [exp]	3.0	0.9301
AT3G10572		APEM9	ABERRANT PEROXISOME MORPHOLOGY...		Lus10040572 [exp]	5.1	0.9086
AT3G62140			unknown protein		Lus10009976 [exp]	6.0	0.9133
AT1G30540			Actin-like ATPase superfamily ...		Lus10033600 [exp]	7.1	0.9146
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10009376 [exp]	8.4	0.9365
AT1G78895			Reticulon family protein (.1)		Lus10033352 [exp]	9.2	0.9300
AT1G79160			unknown protein		Lus10031755 [exp]	10.3	0.8975
AT2G38370			Plant protein of unknown funct...		Lus10009099 [exp]	11.2	0.9266
AT5G03030			Chaperone DnaJ-domain superfam...		Lus10040376 [exp]	12.0	0.9154

Compare expression of checked genes

Lus10020349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.