Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02890 210 / 3e-55 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G43770 92 / 6e-19 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G16680 86 / 2e-16 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G17850 74 / 1e-14 unknown protein AT5G61100 55 / 8e-08 unknown protein AT5G61110 52 / 3e-07 zinc ion binding (.1) AT3G01460 54 / 8e-07 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1) AT5G24330 49 / 2e-05 SDG34, ATXR6 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) AT5G61120 46 / 0.0001 unknown protein AT3G60520 42 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009530 [exp] 2137 / 0 AT5G16680 395 / 5e-115 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10028603 [exp] 79 / 2e-14 AT1G43770 106 / 1e-24 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10035396 [exp] 63 / 5e-10 AT5G61120 76 / 4e-15 unknown protein Lus10030998 [exp] 59 / 1e-08 AT5G61120 71 / 1e-13 unknown protein Lus10030864 [exp] 46 / 0.0003 AT3G01460 511 / 2e-152 methyl-CPG-binding domain 9 (.1) Lus10008796 [exp] 46 / 0.0003 AT3G01460 1574 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10030625 [exp] 46 / 0.0003 AT3G01460 706 / 0.0 methyl-CPG-binding domain 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G077900 [exp] 894 / 0 AT5G16680 536 / 1e-165 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.019G041900 [exp] 533 / 2e-162 AT5G16680 288 / 6e-79 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.003G091000 [exp] 160 / 3e-39 AT3G02890 177 / 3e-45 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.007G110400 [exp] 105 / 1e-23 AT1G43770 135 / 1e-35 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.005G189400 [exp] 97 / 2e-20 AT1G43770 142 / 1e-37 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.005G173200 [exp] 93 / 2e-19 AT1G43770 187 / 2e-54 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.014G040100 [exp] 73 / 7e-13 AT5G61120 127 / 1e-31 unknown protein Potri.017G072460 [exp] 47 / 0.0001 AT3G01460 929 / 0.0 methyl-CPG-binding domain 9 (.1) Potri.012G018300 [exp] 46 / 0.0001 AT5G24330 480 / 3e-171 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.015G009632 [exp] 45 / 0.0003 AT5G24330 483 / 1e-172 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020350 pacid=23144084 polypeptide=Lus10020350 locus=Lus10020350.g ID=Lus10020350.BGIv1.0 annot-version=v1.0 ATGCATCCGAAGGCTCAAACCAGAGTGGAATCTGGAACGTGTAACGTGTGCTCCACTCCTTGTTCATCTTGTATGCACCGGAAGCGTGCTTTTATGGGAT CAAAGGGTGATGAGGGTGATGAATTTTCCGACGAAACTTGCCACGTAGCTGAAACAAGTCAGAATTCCATTAACAAGGATGATTCCTCACCTGCCAAAGG CGGCATGCTAGCCACGTTACAACATGCAACAAGTGCACCTAGTAATGCGCCAAATGTTGATTCATGTCAGGATTCAGTGTCTGAAAGTGCAGAAATTAAA GGTAATGTGAAGATTTCGGATAGAGTGGACGTCTCAATGAAGTCTGAGGCTCTCCCAGAGTCCTCACACGTCGGATCTGTCTCGTTGGTGGACCGGATTT CTCCTAAGCCAGAGCTTATTGCATATAAGCGAGCTGCGTCTGTTAAGCTTGCTGCTTCTAAAGCTGTAGAAGGCCATGGTGATAATATATCATGTGTGAC GGGTGCTGATGTGAGCAGTAACGGAGATTCTGCCAGTAAGGTGCCTGTCCAGAATAACAATCTCTCGTCCAACGCAGATGCTGTAAACTTGAACAAGGAT CCAGTCGTTCAAGTTTATAAAGAAAGTTCTAAACCCATAAAGGAACATGCAAGCCCAATGTTGTCACAAGAGGCAGCACCAGATATTCTACTCCGGGATA ACTCGCAAAATGGTGCAGACAACAACCTGCAAAGTAGAAGTGTAACTCCGGGCGATGGTCCAGAGGTTTCAAGTAAACTTGGTCAAGAGATCAAAGAGGA AACTGGTAATGATAGTCGATCACGTCCAGACAAAGGTATTAGTTCTTCTGTCAAAGGCGAGGAAGATGAGAAGGTTAACGAGTCAGTTGAGCTACCTCAT ACTCGTGAGTTGCCTGAACAATCTTCATCTGCCAATGATGGTGATGAGTCGGAAATTGTGGAACAAGACGTGAAAGTATGTGATATCTGTGGAGACTCAG GTCAGGAAGAGAAGCTTGCATTTTGTAGTAGGTGCAGCGATGGTGCTGAACACACATATTGCATGAAGGAAATGCTCCTAGAAGTTCCGGATGGTGATTG GTTGTGTGAAGAATGCAAGATAGCTGAAGATTCCGAAAATCAGAAGCAAGGTGCAGAGGAAAAAGATGCAAGCAAATTAACTTACCAGAGATTAAAGAAG AGACCTGCTGAGGCTGTAGAGGTGGCCGCTATTCCCAAAAGGCAGGCTGTTGACATGGATTCAGGTTCGTCGAATCCATCGAGCCCTATCAAAGTGGCTG CCCTGCAGCGTAACAGCTCCTCCAGGAGTTGGGATAAGGAGAAAGTAAAGCCAAGCCATCCTGTTAATGACATCACAGAAAGTACATATCTGAAGTCCAA TTCCTTCAACGCAATAAGTTCCAAGCCGAAAGTTAAGCTTGTTGATGAAGTGCCACACAAGCAAAAGAGCTTTAAGGAGAGCTCCTTATCTGACAGTAAG GATGGGCCTGGCAGAACAATGGGCAAATCTATGTCATTTCATTACGCAGGATCTGGAAAAGCTGAGTCAAAAGTGAAATTGTTACCGTCAAAACTTGATA GTAAAGGAGTAAAGCAAGCACGAAACACCTTTGAGAGAAGAAGTTTGCCTAAGTTAGACCGTCCTGGTGGTATGGTGGCACCGAGTTCGAAAGTCACAAC ACCGAAACTTGAACAAAAGCTCACTCGTAACGAAGGTGTCCAATCGTCATCGTCTGGCAACAACAGAGACTTGAATGCCGCTGCTTCTGAGGGAAGGTTG GGCAGCTTATCCAGATCAAATGCTGGCATTACCCGTAAGGGCGACGGTCCTGGTACTTCTGTTCGATCCTCATCTCTTCATGGAGCAGGCAACGTTTCCA TTGAAAGAACTACAAATCAAGCTATCCCCAAGGATGAACCCTCACCTAGTACTTCTTCGTCTGCAGAAAGAACACTGGATACCGGTGATGAAAGCTCATA TGATGGCCTTCGTCCACAGAAATCATTGAGCCTGAATGAGAAAAGCAGGGCGAGTTCTGTTAGTCGCACAAGACCTGCTGGTGCAGTGGGCCTAAAAGAA GCAGGTACTAGTCGGAAAAGGAAGGATATTGGTCTTTCCGGGGAAAACCCCACATCTGTTAGTCCTCGTGGTCCTTCTAGTGAAGCACCAGGTACTAGAA GTGTTGGTGATGAAATAAATAGAGACAGTAAACTAAAAGCTGCAATTGAAGTTGCTATGCTGAAGAGACCGGGAATTTATAGAAAGAAGATTAATCGTGA CCGATCTGACGGGCTATCCTCATCAAATGTGGATGTGAACTCTCCTAAGGATCCACTGGCTAAGTTTTCAGGTTTAAATAGGCTGAAAGTAGCCACTTTT GACGAACGAGCTCATGAAGAGAAACCAGTCCTTGGCCCTTGGTCAACGGACTCTCCAAAACAATCTGACATGGAAAGTCTTAACCTATCTAATACACACT CTGTTAGTACTGCATTCCCGTTGAAAGGGGACTTAGACACAGTAAACACTTCTGCTGGAAAATCTGGTCCTATCCCACTTACAACCATTGAGAAAGCGTC CCCAATTCCAGAGCATGACTTTATCTGGCAGGGAACCTTTGAGGTTAACCGGGGTGGAAAAGTCGCAAATATCCATGGAGGCATTCAAGCACACTTGTCA ACTTGTGCATCATCCAAAGTTCTTGAAGTGGTAAACAAGTTTCCTGAGAATTTTCATTTAGAGGAAGTATCTCGATCAAGTACGTGGCCGAGACAGTTCC AAGAAATTGGCGCTACTGGTGATAATATTGCTCTTTACTTCTTTGCCAAGGACCACGAAAGTTACAACAAGCATTACAAGGGCTTATTGGACAATGCGAT GAAAAGAGATTTGGCCTTCAAAGGATACTTTGATGGTGTTGAACTCTTAATATTCCCATCCACTCAGCTCCCAGAGGATTCACAACGTTGGAACATGATG TTTTTTCTTTGGGGCGTGTTCAAGGCGAGGAAATCCGGTTCTGATGACTGTCTAAGAAAGCTAGCTGTCCCCAGTTTGAATTTGGTTGCTCAGGGTGAAG AAATGGCCGTGGCTAATGTATCATCGCCGGCTAATAGGTTCCCACCTCAATATGCAGGGAGAGAAATTTCCGCATTAGATGATCACCGCAACACTGCTGT TTCATCAAGGGACTTGAAAAACACGCATGGAACAGAAAATGGTGCTGTGGATAAGGGAAAAGTAGACTCTGCGATCAAGGTAGAGCAGCCAGAATGTATA CTCGACTGTGGTGGAACGACAAGCGTGGCATCGTCAAATCAAGTTCGGAGCAGCAGAGCCATGGCTAGCCCGGTCGACATTGGCCGTCCAGAGTCCAGAA CGGATACAGAAGAGAAACCATGTGCTCCGGTTGTCGAGTCCAAGAATGGCTTCAATGACAAGGAAGCACAGAAGCAAGTAGACACTTCAAATCTCCGAGC TGATGCATCTAAACTCGAGAACCTTCAGATCGAGACTCAAAACGTAGGTGTGAGGGGCTGCATTTCTGATCAAGAGCCAGCAGTTACCAGGAAAGACCGT AGCAATACGGGCGGCGGAGTTAACATCATGAGAGACTTGAACGAAGTTGTTGATATGGAGATCGAAACTTCCGAGGATAGAGATGACATGGCCTCCGACA AAAGGAAAATGCCGCTCTTGGATCTCTCCAAGCTGCCACCCGAGAGTCCAAGTAGCATCATAGATCATGAAATGCCATGGAGTAACGCAACAGCAAAAAC TGGGTCTGTAGATGGACAAGGTGCCAACAAGAAGCGGAGAGTGAGCTACGAAGGTTCTGAGTCTTCCCCACTACCTATTGGTTCTTCGGTAGAGAAGAGA TACAATGAGATGTCGGAGAAGAAAGCCGTTCCTGAAAACTCGAAAGCTCCGGAGTGGTTTTCCTTCCCGGCTTTGGATTCACACAGTGCGTCAATGAGGC CGAACACCATCCCCTGGGCACGGGGCTCCTCGTCGGACCAACCATCATCGCGTCACGAAATCCCTAACCTTAATCTCGCTTTGGAGGAAGATGAGACAGA GTCCGACACTGTACCACCCCCTCCATCAAGGAAGGGAATGCTGCCTTTCATAATTGCAACAGTAGACAATCATGCTGCTAGCCAGAACAACTCGTTGCTG CCGCAGCCACCGCCGGCAAAGGAAGTGAAGGAGAGAGAGCAAGAGGAGAGCGTTTCGGCGGCCCTTTCTCTATCTCTTTCGTTTCCCTTCCCGGATAAGG AACAACCGACCAAACCACCACCGGAGTATGCTCCCTTTTGGAAGCTCCACAGATGA
AA sequence Show only first row Show all	>Lus10020350 pacid=23144084 polypeptide=Lus10020350 locus=Lus10020350.g ID=Lus10020350.BGIv1.0 annot-version=v1.0 MHPKAQTRVESGTCNVCSTPCSSCMHRKRAFMGSKGDEGDEFSDETCHVAETSQNSINKDDSSPAKGGMLATLQHATSAPSNAPNVDSCQDSVSESAEIK GNVKISDRVDVSMKSEALPESSHVGSVSLVDRISPKPELIAYKRAASVKLAASKAVEGHGDNISCVTGADVSSNGDSASKVPVQNNNLSSNADAVNLNKD PVVQVYKESSKPIKEHASPMLSQEAAPDILLRDNSQNGADNNLQSRSVTPGDGPEVSSKLGQEIKEETGNDSRSRPDKGISSSVKGEEDEKVNESVELPH TRELPEQSSSANDGDESEIVEQDVKVCDICGDSGQEEKLAFCSRCSDGAEHTYCMKEMLLEVPDGDWLCEECKIAEDSENQKQGAEEKDASKLTYQRLKK RPAEAVEVAAIPKRQAVDMDSGSSNPSSPIKVAALQRNSSSRSWDKEKVKPSHPVNDITESTYLKSNSFNAISSKPKVKLVDEVPHKQKSFKESSLSDSK DGPGRTMGKSMSFHYAGSGKAESKVKLLPSKLDSKGVKQARNTFERRSLPKLDRPGGMVAPSSKVTTPKLEQKLTRNEGVQSSSSGNNRDLNAAASEGRL GSLSRSNAGITRKGDGPGTSVRSSSLHGAGNVSIERTTNQAIPKDEPSPSTSSSAERTLDTGDESSYDGLRPQKSLSLNEKSRASSVSRTRPAGAVGLKE AGTSRKRKDIGLSGENPTSVSPRGPSSEAPGTRSVGDEINRDSKLKAAIEVAMLKRPGIYRKKINRDRSDGLSSSNVDVNSPKDPLAKFSGLNRLKVATF DERAHEEKPVLGPWSTDSPKQSDMESLNLSNTHSVSTAFPLKGDLDTVNTSAGKSGPIPLTTIEKASPIPEHDFIWQGTFEVNRGGKVANIHGGIQAHLS TCASSKVLEVVNKFPENFHLEEVSRSSTWPRQFQEIGATGDNIALYFFAKDHESYNKHYKGLLDNAMKRDLAFKGYFDGVELLIFPSTQLPEDSQRWNMM FFLWGVFKARKSGSDDCLRKLAVPSLNLVAQGEEMAVANVSSPANRFPPQYAGREISALDDHRNTAVSSRDLKNTHGTENGAVDKGKVDSAIKVEQPECI LDCGGTTSVASSNQVRSSRAMASPVDIGRPESRTDTEEKPCAPVVESKNGFNDKEAQKQVDTSNLRADASKLENLQIETQNVGVRGCISDQEPAVTRKDR SNTGGGVNIMRDLNEVVDMEIETSEDRDDMASDKRKMPLLDLSKLPPESPSSIIDHEMPWSNATAKTGSVDGQGANKKRRVSYEGSESSPLPIGSSVEKR YNEMSEKKAVPENSKAPEWFSFPALDSHSASMRPNTIPWARGSSSDQPSSRHEIPNLNLALEEDETESDTVPPPPSRKGMLPFIIATVDNHAASQNNSLL PQPPPAKEVKEREQEESVSAALSLSLSFPFPDKEQPTKPPPEYAPFWKLHR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02890			RING/FYVE/PHD zinc finger supe...		Lus10020350 [exp]	0	1
AT5G16680			RING/FYVE/PHD zinc finger supe...		Lus10009530 [exp]	2.0	0.9030
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10015325 [exp]	3.5	0.8893
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10025454 [exp]	4.6	0.8812
AT5G52530			dentin sialophosphoprotein-rel...		Lus10038838 [exp]	5.5	0.8763
AT5G44180	HD		Homeodomain-like transcription...		Lus10018634 [exp]	7.9	0.8767
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10028842 [exp]	8.0	0.8499
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Lus10042137 [exp]	9.2	0.8950
AT4G26450		WIP1	unknown protein		Lus10027096 [exp]	9.2	0.8814
AT2G22010		RKP	related to KPC1 (.1.2)		Lus10016817 [exp]	9.8	0.8796
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Lus10032516 [exp]	10.5	0.8759

Compare expression of checked genes

Lus10020350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.