Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27630 643 / 0 GTG2 GPCR-type G protein 2 (.1.2.3) AT1G64990 613 / 0 GTG1 GPCR-type G protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009531 [exp] 684 / 0 AT4G27630 719 / 0.0 GPCR-type G protein 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G077700 [exp] 664 / 0 AT4G27630 691 / 0.0 GPCR-type G protein 2 (.1.2.3) Potri.019G042201 [exp] 52 / 6e-09 AT4G27630 61 / 4e-13 GPCR-type G protein 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12430 [flax] [poplar] ABA_GPCR Abscisic acid G-protein coupled receptor PF12537 [flax] [poplar] GPHR_N The Golgi pH Regulator (GPHR) Family N-terminal
Representative CDS sequence Show only first row Show all	>Lus10020351 pacid=23144130 polypeptide=Lus10020351 locus=Lus10020351.g ID=Lus10020351.BGIv1.0 annot-version=v1.0 ATGGGATGGGGGATGGTGATATACGAAGGCGTGGTGGTGGTAGGGTCACTCTGCCTGCTAGGCTGGTCGGGGCTCTGGTTCTTGAATCGCAGACTCTACA AAGAGTACGAGGAGAAGAGAGTCCTGGTTCAGATCATTTTTAGTGTCGTCTTCGCCTTCTCCTGCAACCTCCTCCAGCTTGTGCTCTACGAGATCATCAA TTTCCTCTCGAAAGAGACGAGATGGATTAACTGGAAGGTGGATCTCTTTTGTCTAATTCTGTTGCTTGTCTTCTTGTTGCCATACTATCATTGCTACTTG ATGCTCTGCAACAGTGGTGTAAGGAAAGAGCGAGCTGCACTTGGAGCTGTCTTGTTTGTACTGACCTTTCTGTATGCTTTCTGGCGCATGGGCATTCACT TCCCGATGCCTTCTCCTGATAAAGGATTTTTTACCATGCCTCAGCTAGTAAGTAGAATTGGTGTCATTGGTGTGACCGTCATGGCTGTTTTATCTGGTTT TGGAGCTGTGAATTTACCATACAGTTATTTATCTCTCTTTATAAGAGAAATTGAGGAGACGGAAATCAAGGCACTGGAAAGACAATTGATGCATTCTATT GAAACCTGCATCACTAAGAAAAAGAAAATAATTCTCACGCAAATGGAGATAGAGCGCATGCAAGGATCCGAGGAGAAGCTAAATGGTAAATCTTTCTTTA AACGGATAGTTGGAACAGTTGTACGGTCTGTGCAAGATGATAAGACGGAAGAAGATATAAAGAACATGGAAGCAGAAGTACAAGCCTTGGAGGAGCTTTC AAAACAGCTGTTCCTGGAAATATATGAGCTGCGACAAGCTAAGGAAGCGGCTGCTTTTTCTCGAACCTGGAGGGGACATATGCAAAATTTTCTTGGCTAC GCATGTTCTGTTTATTGTGTGTATAAAATGATTAAGTCCTTGCAGAGTGTTATATTCAAAGAGGCCGGGTCTGTTGATCCTGTTACAATGACAATCAGCA TATTCTTACAGTTCTTCGACATTGGAATCAATGCTGCACTATTATCTCAGTACATTTCTTTGATGTTCATCGGACTGTTGATCGTCATATCAGTTCGCGG TTTCTTGTCAAACTTGATGAAGTTCTTCTTTGCCGTGTCCAGAGTCGGGAGCGGGTCCTCGAGCAACGTAGTGCTTTTCCTATCTGAAATCATGGGCATG TACTTCCTCTCTTCCATTCTGCTGATAAGGAAAAGCTTAGCCACTGAATACCGGATGATCATAACCGACGTATTGGGTGGGGATATCCAGTTCGACTTCT ACCACAGATGGTTCGACGCAATCTTTGCAGCTAGCGCGTTCCTTTCTCTACTCTTGCTTTCTGCACATTACACGTCTCGCCAGACCGATAAGCATCCCAT TGATTGA
AA sequence Show only first row Show all	>Lus10020351 pacid=23144130 polypeptide=Lus10020351 locus=Lus10020351.g ID=Lus10020351.BGIv1.0 annot-version=v1.0 MGWGMVIYEGVVVVGSLCLLGWSGLWFLNRRLYKEYEEKRVLVQIIFSVVFAFSCNLLQLVLYEIINFLSKETRWINWKVDLFCLILLLVFLLPYYHCYL MLCNSGVRKERAALGAVLFVLTFLYAFWRMGIHFPMPSPDKGFFTMPQLVSRIGVIGVTVMAVLSGFGAVNLPYSYLSLFIREIEETEIKALERQLMHSI ETCITKKKKIILTQMEIERMQGSEEKLNGKSFFKRIVGTVVRSVQDDKTEEDIKNMEAEVQALEELSKQLFLEIYELRQAKEAAAFSRTWRGHMQNFLGY ACSVYCVYKMIKSLQSVIFKEAGSVDPVTMTISIFLQFFDIGINAALLSQYISLMFIGLLIVISVRGFLSNLMKFFFAVSRVGSGSSSNVVLFLSEIMGM YFLSSILLIRKSLATEYRMIITDVLGGDIQFDFYHRWFDAIFAASAFLSLLLLSAHYTSRQTDKHPID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27630		GTG2	GPCR-type G protein 2 (.1.2.3)		Lus10020351 [exp]	0	1
AT4G27630		GTG2	GPCR-type G protein 2 (.1.2.3)		Lus10009531 [exp]	1.0	0.9208
AT5G64460			Phosphoglycerate mutase family...		Lus10032819 [exp]	3.0	0.8250
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10008044 [exp]	3.7	0.8333
AT1G08420		BSL2	BRI1 suppressor 1 (BSU1)-like ...		Lus10004100 [exp]	4.7	0.8550
AT4G24530			O-fucosyltransferase family pr...		Lus10015890 [exp]	5.0	0.8364
AT1G54220			Dihydrolipoamide acetyltransfe...		Lus10006877 [exp]	5.1	0.8210
AT2G34250			SecY protein transport family ...		Lus10031399 [exp]	5.7	0.8288
AT5G08500			Transmembrane CLPTM1 family pr...		Lus10019695 [exp]	8.9	0.8418
AT4G24630			DHHC-type zinc finger family p...		Lus10028687 [exp]	10.9	0.7691
AT4G02680		EOL1	ETO1-like 1 (.1)		Lus10022084 [exp]	11.7	0.8356

Compare expression of checked genes

Lus10020351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.