Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13960 158 / 5e-45 GRF ATGRF5 growth-regulating factor 5 (.1) AT4G37740 145 / 2e-39 GRF ATGRF2 growth-regulating factor 2 (.1) AT2G36400 143 / 3e-39 GRF ATGRF3 growth-regulating factor 3 (.1) AT2G06200 131 / 3e-36 GRF ATGRF6 growth-regulating factor 6 (.1) AT3G52910 131 / 7e-35 GRF ATGRF4 growth-regulating factor 4 (.1) AT2G22840 131 / 4e-34 GRF ATGRF1 growth-regulating factor 1 (.1) AT5G53660 109 / 4e-27 GRF ATGRF7 growth-regulating factor 7 (.1) AT4G24150 99 / 7e-23 GRF ATGRF8 growth-regulating factor 8 (.1) AT2G45480 89 / 3e-19 GRF ATGRF9 growth-regulating factor 9 (.1) AT1G09060 42 / 0.0009 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009533 [exp] 466 / 1e-163 AT3G13960 162 / 7e-45 growth-regulating factor 5 (.1) Lus10015651 [exp] 145 / 1e-41 AT3G13960 155 / 5e-45 growth-regulating factor 5 (.1) Lus10037668 [exp] 145 / 1e-41 AT3G13960 156 / 1e-45 growth-regulating factor 5 (.1) Lus10004455 [exp] 147 / 7e-41 AT3G13960 150 / 8e-42 growth-regulating factor 5 (.1) Lus10033441 [exp] 148 / 9e-41 AT3G13960 191 / 3e-56 growth-regulating factor 5 (.1) Lus10000473 [exp] 147 / 1e-40 AT3G13960 187 / 5e-55 growth-regulating factor 5 (.1) Lus10014380 [exp] 136 / 3e-38 AT2G36400 181 / 5e-55 growth-regulating factor 3 (.1) Lus10011558 [exp] 136 / 6e-36 AT2G22840 268 / 2e-83 growth-regulating factor 1 (.1) Lus10019274 [exp] 135 / 1e-35 AT2G22840 261 / 4e-81 growth-regulating factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G077500 [exp] 288 / 9e-96 AT3G13960 160 / 1e-45 growth-regulating factor 5 (.1) Potri.019G042300 [exp] 268 / 2e-88 AT3G13960 157 / 2e-44 growth-regulating factor 5 (.1) Potri.001G132600 [exp] 200 / 1e-61 AT4G37740 142 / 6e-38 growth-regulating factor 2 (.1) Potri.003G100800 [exp] 176 / 3e-52 AT4G37740 140 / 2e-37 growth-regulating factor 2 (.1) Potri.001G169100 [exp] 164 / 1e-47 AT3G13960 206 / 4e-63 growth-regulating factor 5 (.1) Potri.018G065400 [exp] 164 / 2e-47 AT3G13960 181 / 3e-53 growth-regulating factor 5 (.1) Potri.003G065000 [exp] 157 / 3e-45 AT3G13960 200 / 4e-61 growth-regulating factor 5 (.1) Potri.006G143200 [exp] 157 / 8e-45 AT3G13960 188 / 7e-56 growth-regulating factor 5 (.1) Potri.014G012800 [exp] 150 / 2e-40 AT2G22840 303 / 1e-95 growth-regulating factor 1 (.1) Potri.002G115100 [exp] 147 / 1e-39 AT2G22840 302 / 2e-95 growth-regulating factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08879 [flax] [poplar] WRC WRC PF08880 [flax] [poplar] QLQ QLQ
Representative CDS sequence Show only first row Show all	>Lus10020352 pacid=23144102 polypeptide=Lus10020352 locus=Lus10020352.g ID=Lus10020352.BGIv1.0 annot-version=v1.0 ATGAGCAGTGGTGGTGGTGGGACAAGTACAGTGACGATGATGAGGTCTCCATTCACAGTGTCACAGTGGCAAGAACTGGAGCACCAAGCTTTGATCTACA AGTACATGATGGCTGGCGTCCCTGTCCCTCCTGATCTTATGCTCCCCATCCAGAAATCCTTCGACTCCATTTCCCCCTCTTTCTTCCACCACCCCTCCTT GGGGTATTGCTCTTTCTACGGGAAGAAGGTGGATCCGGAGCCAGGGAGATGCAGGAGGACTGATGGCAAGAAATGGAGGTGCTCCAAAGATGCCTACCCT GACTCCAAGTATTGTGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCATCATCACAACAAACAACCATCATCACACAGTCCT CCACCGCCACGACACCTACCGCGGCTGGTACTGTTGTGATCGACAATAACTCCGGGATCGGAGGCTTCCACCACCACGCCTTTTCGAATCCTGTTTCGGG AAATAACCAGTCTCCGTACCACCACCATCTTGACTCCATCCCTTATGCAATTCCCAGCAAAGATTACAGGTACCTCCAAGGAGTCAAGGCCGAGGCCTCC AGCAACCGCGGTAATTTCACAAACAACGAAGACTCATCAGCATGGCCTCTGATGCAATCCAGAGTCTCGTCGTCGTCCTTCTCAACATCCAAGTCAACTC CAATGAACGACTACTCCTCCAACCAGCCGTTCCTCAACTTCGCCGAACCAGCAGAGAAACAACACGAAAGCCAGTCGCTTCGTCCTTTCTTCGACGAGTG GCCTAAAACCCGAGGAGGCGGAGGAGGAGGAAAGTCCTGGTCGGAGCTCGATCATCACGATGACAGCAGCAGGTCCAACGCTTCATTCTCCTCCACCACA CAGCTCTCCATCTCCATCCCCACCATGGCTTCCCCCGACATGATCTCCACGAGCTCCCGCTCTTCGCCTAGTGAGTCTTCTAATGTCTCTTCAAAATTGC CTTCCAATCTGTTTCTATAA
AA sequence Show only first row Show all	>Lus10020352 pacid=23144102 polypeptide=Lus10020352 locus=Lus10020352.g ID=Lus10020352.BGIv1.0 annot-version=v1.0 MSSGGGGTSTVTMMRSPFTVSQWQELEHQALIYKYMMAGVPVPPDLMLPIQKSFDSISPSFFHHPSLGYCSFYGKKVDPEPGRCRRTDGKKWRCSKDAYP DSKYCERHMHRGRNRSRKPVESSSQQTTIITQSSTATTPTAAGTVVIDNNSGIGGFHHHAFSNPVSGNNQSPYHHHLDSIPYAIPSKDYRYLQGVKAEAS SNRGNFTNNEDSSAWPLMQSRVSSSSFSTSKSTPMNDYSSNQPFLNFAEPAEKQHESQSLRPFFDEWPKTRGGGGGGKSWSELDHHDDSSRSNASFSSTT QLSISIPTMASPDMISTSSRSSPSESSNVSSKLPSNLFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10020352 [exp]	0	1
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10009533 [exp]	1.0	0.9894
AT1G14900		HMGA	high mobility group A (.1)		Lus10004056 [exp]	1.4	0.9816
AT1G14900		HMGA	high mobility group A (.1)		Lus10002284 [exp]	3.0	0.9783
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10014380 [exp]	4.5	0.9655
AT2G30620			winged-helix DNA-binding trans...		Lus10006562 [exp]	4.5	0.9492
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10014381 [exp]	5.0	0.9600
AT1G79060			unknown protein		Lus10031795 [exp]	5.3	0.9527
AT2G20515			unknown protein		Lus10022928 [exp]	7.5	0.9517
AT1G79060			unknown protein		Lus10031218 [exp]	8.8	0.9463
AT4G00380		FDM2	factor of DNA methylation 2, X...		Lus10005463 [exp]	15.1	0.8633

Compare expression of checked genes

Lus10020352 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.