Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64940 571 / 0 CYP89A6 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) AT1G64950 563 / 0 CYP89A5 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) AT2G12190 556 / 0 CYP89A4 Cytochrome P450 superfamily protein (.1) AT1G64930 527 / 0 CYP89A7 "cytochrome P450, family 87, subfamily A, polypeptide 7", cytochrome P450, family 87, subfamily A, polypeptide 7 (.1) AT1G64900 508 / 2e-177 CYP89A2 "cytochrome P450, family 89, subfamily A, polypeptide 2", cytochrome P450, family 89, subfamily A, polypeptide 2 (.1) AT3G03470 486 / 9e-169 CYP89A9 "cytochrome P450, family 87, subfamily A, polypeptide 9", cytochrome P450, family 87, subfamily A, polypeptide 9 (.1) AT5G61320 478 / 2e-165 CYP89A3 "cytochrome P450, family 89, subfamily A, polypeptide 3", cytochrome P450, family 89, subfamily A, polypeptide 3 (.1) AT1G11600 327 / 2e-106 CYP77B1 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) AT5G04630 326 / 4e-106 CYP77A9 "cytochrome P450, family 77, subfamily A, polypeptide 9", cytochrome P450, family 77, subfamily A, polypeptide 9 (.1) AT3G10560 324 / 3e-105 CYP77A7, UNE9 UNFERTILIZED EMBRYO SAC 9, CYTOCHROME P450, FAMILY 77, SUBFAMILY A, POLYPEPTIDE 7, Cytochrome P450 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028654 [exp] 746 / 0 AT1G64940 562 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10020359 [exp] 736 / 0 AT1G64940 550 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10020360 [exp] 687 / 0 AT1G64940 613 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10010229 [exp] 612 / 0 AT1G64940 574 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10002138 [exp] 506 / 6e-176 AT1G64940 586 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10013067 [exp] 483 / 2e-167 AT1G64940 472 / 4e-163 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10009536 [exp] 393 / 2e-135 AT1G64940 290 / 1e-95 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10034156 [exp] 346 / 1e-113 AT5G04660 679 / 0.0 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) Lus10020356 [exp] 320 / 5e-107 AT1G64940 243 / 2e-77 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G088086 [exp] 635 / 0 AT1G64950 636 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G087950 [exp] 631 / 0 AT1G64950 642 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G088154 [exp] 630 / 0 AT1G64950 639 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G088018 [exp] 623 / 0 AT1G64940 605 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.005G079600 [exp] 615 / 0 AT1G64940 575 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.013G076700 [exp] 577 / 0 AT1G64940 592 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.013G076600 [exp] 577 / 0 AT1G64940 578 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.008G099100 [exp] 561 / 0 AT1G64940 540 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.001G330501 [exp] 545 / 0 AT1G64940 569 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.015G006100 [exp] 521 / 0 AT1G64940 484 / 7e-168 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10020353 pacid=23144043 polypeptide=Lus10020353 locus=Lus10020353.g ID=Lus10020353.BGIv1.0 annot-version=v1.0 ATGGAGGATCACTGGTTCCTTATCCTAGTCGCCCTTTCAATCGGCTTCCTACTCAAATTCTTAATCAACCTCTTCTCATCCTTCTCCACGGGCAAGTCAT CTCTTCCGCCGGGTCCAACCGGGCTACCGTTCATCGGAAACCTCCAACTCATCCGGTCCGGACTTGAACCACTCCTCCGTTCCCTCCACGCCAAACACGG CCCTGCCGTCACCCTCCACATCGGTAGCCAGCCAACAATTTTCATAGCTGATAGAGCTACCGCACACCGTGTCTTGGTCCAGAACGGCGCCGTATTCGCT GACCGTCCACCCGCTTCTCCCTTGTGGCGAACCATCACCTCGGACCTGCACACTGTAAGCAGCTCGCGTTACGGCCCGACGTGGCGGTTCCTTCGCCGCA ACCTCACGGCCGAGATCCTCCACCCTTCCCGCGTGAAAGCCTATTCTCATGCTCGTTCGTGGGTGTTGGAAGTGCTCAAGAGCCGGATTGTTGGGTTTGG ATCGGAGCCGGTTGGGGTCATGGAACCGTTCCAGTACGCGATGTTCTGCTTGCTCGCGTACATGTGCTTTGGGGACAAGCTGGAGGAGAAGCAGATATTG GAGATCGAGCGAGTCGAGCGGGAGATGATTACGAACTTTCATCGGTTTACTATTCTCGATTTCGCTCCTCTGATCACGAGGACCCTCCTTAGGAAGCGGT GGTCGGAGTTACTTCAGATGAGGAAGGATCAGGAGGACATATTGCTCCCACTGATCCGATCCAGAAAGAGCAAAATCGTCGAAGACGAAGAAAATAGAGC TCCTCGTGATCACGTCATGGCGTACGTCGACACGCTCTTCGATCTAGAACTGCCGGAGGAGAAGCGGAAATTGACAGAGTCAGAGATGGTTAGCTTATGT AACGAGTTTCTCAACGCCGGTACGGACACCACCTCCAACGCCTTACATTGGATCATGGCAAATCTGGTGAAATATCCTGATCTACAAGCCAAGCTATTCA ACGAAATCAAATCCCTAATCGGGGAAACAGAGAAAATGGAAATCAAAGAGGAGGATCTACGGAAGCTGCCGTACCTGAAGGCCGTGGTGCTCGAAGGACT GCGCCGCCATCCGCCGGGGCATTTCCTGCTGCCCCACGCCGTAACGTCAACGGCGGAGCTCGGCGTCGGAGGGTACTCTGTGCCGAAGGACGCGACGGTG AATTTCATGGTGGCAGAGATGGGGCTTGATCCGAAAGCGTGGGAGGATCCTACGTCGTTTAATCCCGAGAGGTTTATGGACGAGACTACTCCGTTTGATA TAACGTCTACGAAGGAGATTAAAATGATGCCATTTGGTGCCGGGAGGAGGATGTGCCCTGCATATACATTGGCTTTACTTCATCTTGAGTATTTCGTTGC TAATTTGATTTGGAGTTTCGAGTGGAAGGCCGTCGCCAACAAAGAGGTTGATCTTTCGGGAGAGGAACTATCCCTCGCGGAGGTGATGAAGAATCCGTTG ATGGCTCACGTGTCGCCGAGGCCCGGGTTGCATTATTAG
AA sequence Show only first row Show all	>Lus10020353 pacid=23144043 polypeptide=Lus10020353 locus=Lus10020353.g ID=Lus10020353.BGIv1.0 annot-version=v1.0 MEDHWFLILVALSIGFLLKFLINLFSSFSTGKSSLPPGPTGLPFIGNLQLIRSGLEPLLRSLHAKHGPAVTLHIGSQPTIFIADRATAHRVLVQNGAVFA DRPPASPLWRTITSDLHTVSSSRYGPTWRFLRRNLTAEILHPSRVKAYSHARSWVLEVLKSRIVGFGSEPVGVMEPFQYAMFCLLAYMCFGDKLEEKQIL EIERVEREMITNFHRFTILDFAPLITRTLLRKRWSELLQMRKDQEDILLPLIRSRKSKIVEDEENRAPRDHVMAYVDTLFDLELPEEKRKLTESEMVSLC NEFLNAGTDTTSNALHWIMANLVKYPDLQAKLFNEIKSLIGETEKMEIKEEDLRKLPYLKAVVLEGLRRHPPGHFLLPHAVTSTAELGVGGYSVPKDATV NFMVAEMGLDPKAWEDPTSFNPERFMDETTPFDITSTKEIKMMPFGAGRRMCPAYTLALLHLEYFVANLIWSFEWKAVANKEVDLSGEELSLAEVMKNPL MAHVSPRPGLHY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020353 [exp]	0	1
AT3G15810			Protein of unknown function (D...		Lus10032602 [exp]	1.4	0.9150
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10031587 [exp]	1.4	0.9054
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10033754 [exp]	4.5	0.8920
AT5G02750		SGR9	SHOOT GRAVITROPISM 9, RING/U-b...		Lus10003992 [exp]	5.5	0.8901
AT3G43660			Vacuolar iron transporter (VIT...		Lus10025685 [exp]	6.0	0.8927
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10003143 [exp]	6.2	0.9037
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Lus10000963 [exp]	8.1	0.8577
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10035190 [exp]	8.7	0.8648
AT4G29110			unknown protein		Lus10014153 [exp]	9.0	0.8799
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10014407 [exp]	9.5	0.8857

Compare expression of checked genes

Lus10020353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.