Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64970 434 / 8e-154 VTE4, TMT1, G-TMT VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) AT1G76090 76 / 1e-15 SMT3 sterol methyltransferase 3 (.1) AT3G18000 75 / 8e-15 XPL1, NMT1, XIPOTL1, PEAMT XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G13710 74 / 1e-14 CPH, SMT1 CEPHALOPOD, sterol methyltransferase 1 (.1.2) AT1G73600 74 / 1e-14 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G48600 74 / 2e-14 AtPMEAMT phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G20330 71 / 8e-14 FRL1, CVP1, SMT2 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) AT4G33110 48 / 4e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G33120 46 / 2e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G23360 44 / 5e-05 MENG S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009537 [exp] 612 / 0 AT1G64970 453 / 3e-160 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Lus10005625 [exp] 76 / 2e-15 AT1G20330 582 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10023995 [exp] 73 / 1e-14 AT1G20330 459 / 9e-164 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10009056 [exp] 73 / 4e-14 AT1G73600 773 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10042006 [exp] 72 / 5e-14 AT3G18000 841 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018010 [exp] 72 / 7e-14 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10031348 [exp] 72 / 1e-13 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10022684 [exp] 47 / 1e-05 AT4G33110 516 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10029736 [exp] 44 / 0.0002 AT1G29470 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G077000 [exp] 461 / 2e-164 AT1G64970 441 / 8e-156 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Potri.001G263700 [exp] 78 / 4e-16 AT5G13710 587 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.009G058600 [exp] 77 / 9e-16 AT5G13710 591 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.005G245800 [exp] 76 / 4e-15 AT1G20330 667 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.012G047400 [exp] 75 / 7e-15 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.015G039000 [exp] 74 / 2e-14 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G016300 [exp] 73 / 2e-14 AT1G20330 647 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.016G056000 [exp] 64 / 3e-11 AT5G13710 513 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.018G060000 [exp] 45 / 2e-05 AT4G33110 585 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G075800 [exp] 44 / 0.0001 AT1G29470 1048 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10020357 pacid=23144154 polypeptide=Lus10020357 locus=Lus10020357.g ID=Lus10020357.BGIv1.0 annot-version=v1.0 ATGGCGGCCATCCTTCAATGTCGGCCCACGGTTGCTCCTCTATATAATAACCCACCAACCGTCCGTCGAGAACTATCTCCCGTCACTTTCCATTCGTCTG GCGTGTGGGAGGACATCTGGGGGGACCATATGCACCACGGGTTCTACGAGCCTGATGCTCGGGTTTCCGGGTCTGAGTCCGACCACCGCGCCGCTCAAAT CCGAATGATCGAGGAGTCTCTCCGATTTGCCGCCGTCCCAGAGGATGTGGAGAAGAGGCCGAAGAAGGTAGTGGATGTAGGGTGTGGAATTGGCGGGAGC TCAAGGTACTTAGCCAAGAAATATGAAGCCCAATGCCAAGGCATAACGCTAAGCCCTGTTCAAGCAGAGAGAGCCAATTCACTAGCAGCTGCGCAAGGGC TAGCTGAAAAGGCAGTCTTCCAAGTTGGTGATGCTCTGAACCAGCCATTCCCGGATGGGGAGTTTGATCTCGTCTGGTCCATGGAGAGTGGCGAGCACAT GCCCGACAAAGCCAAGTTTGTGAGTGAGCTAGCTAGAGTTGCAGCACCAGGAGGCACCATGATAATAGTGACATGGTGCCATAGAGATCTGGAGAGTTCA GAGGATAGCTTGAGCAAGTGGGAGAAAGATCATCTTGATAAGATTTGCAGGGCTTTCTATCTTCCTGAGTGGTGCTCTACTTCTGACTATGTCAAGTTGC TCCAATCCCTCAATCTTCAGGATATAAGAACAGCAGATTGGTCTGAGAATGTCGCCCCATTTTGGCCGGCGGTCATCCGGTCTGCCCTGACTTGGAAGGG CTTCACTTCCATCCTCCGTACCGGTCTGAAGACCATAAGAGGAGCATTGGTTATGCCGTTGATGATCGAAGGGTTCAACAAGGGTCTGATCAAGTTCTCC ATTATCACTTGCAGAAAACCTTCCATTTAA
AA sequence Show only first row Show all	>Lus10020357 pacid=23144154 polypeptide=Lus10020357 locus=Lus10020357.g ID=Lus10020357.BGIv1.0 annot-version=v1.0 MAAILQCRPTVAPLYNNPPTVRRELSPVTFHSSGVWEDIWGDHMHHGFYEPDARVSGSESDHRAAQIRMIEESLRFAAVPEDVEKRPKKVVDVGCGIGGS SRYLAKKYEAQCQGITLSPVQAERANSLAAAQGLAEKAVFQVGDALNQPFPDGEFDLVWSMESGEHMPDKAKFVSELARVAAPGGTMIIVTWCHRDLESS EDSLSKWEKDHLDKICRAFYLPEWCSTSDYVKLLQSLNLQDIRTADWSENVAPFWPAVIRSALTWKGFTSILRTGLKTIRGALVMPLMIEGFNKGLIKFS IITCRKPSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64970		VTE4, TMT1, G-T...	VITAMIN E DEFICIENT 4, gamma-t...		Lus10020357 [exp]	0	1
AT5G05670			signal recognition particle bi...		Lus10030593 [exp]	2.0	0.7616
AT4G30660			Low temperature and salt respo...		Lus10036592 [exp]	3.9	0.7400
AT1G64970		VTE4, TMT1, G-T...	VITAMIN E DEFICIENT 4, gamma-t...		Lus10009537 [exp]	4.9	0.8151
AT5G58005			Cytochrome c oxidase, subunit ...		Lus10036285 [exp]	9.5	0.7365
AT3G62550			Adenine nucleotide alpha hydro...		Lus10010013 [exp]	11.4	0.6962
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10026375 [exp]	11.5	0.7239
AT1G16040			unknown protein		Lus10015585 [exp]	14.3	0.7404
AT1G61700			RNA polymerases N / 8 kDa subu...		Lus10008095 [exp]	18.6	0.7525
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Lus10015612 [exp]	19.3	0.6997
AT2G44970			alpha/beta-Hydrolases superfam...		Lus10011122 [exp]	19.7	0.7037

Compare expression of checked genes

Lus10020357 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.