Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64950 487 / 7e-169 CYP89A5 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) AT1G64940 486 / 9e-169 CYP89A6 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) AT2G12190 485 / 4e-168 CYP89A4 Cytochrome P450 superfamily protein (.1) AT1G64930 455 / 3e-156 CYP89A7 "cytochrome P450, family 87, subfamily A, polypeptide 7", cytochrome P450, family 87, subfamily A, polypeptide 7 (.1) AT1G64900 432 / 1e-147 CYP89A2 "cytochrome P450, family 89, subfamily A, polypeptide 2", cytochrome P450, family 89, subfamily A, polypeptide 2 (.1) AT5G61320 415 / 5e-141 CYP89A3 "cytochrome P450, family 89, subfamily A, polypeptide 3", cytochrome P450, family 89, subfamily A, polypeptide 3 (.1) AT3G03470 404 / 1e-136 CYP89A9 "cytochrome P450, family 87, subfamily A, polypeptide 9", cytochrome P450, family 87, subfamily A, polypeptide 9 (.1) AT1G11600 257 / 1e-79 CYP77B1 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) AT3G10560 256 / 5e-79 CYP77A7, UNE9 UNFERTILIZED EMBRYO SAC 9, CYTOCHROME P450, FAMILY 77, SUBFAMILY A, POLYPEPTIDE 7, Cytochrome P450 superfamily protein (.1) AT5G04630 253 / 1e-77 CYP77A9 "cytochrome P450, family 77, subfamily A, polypeptide 9", cytochrome P450, family 77, subfamily A, polypeptide 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020353 [exp] 653 / 0 AT1G64940 572 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10028654 [exp] 635 / 0 AT1G64940 562 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10020360 [exp] 591 / 0 AT1G64940 613 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10010229 [exp] 516 / 3e-180 AT1G64940 574 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10002138 [exp] 432 / 8e-147 AT1G64940 586 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10013067 [exp] 390 / 7e-131 AT1G64940 472 / 4e-163 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10009536 [exp] 295 / 4e-97 AT1G64940 290 / 1e-95 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10034156 [exp] 283 / 3e-89 AT5G04660 679 / 0.0 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) Lus10007659 [exp] 259 / 3e-80 AT1G11600 639 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G088086 [exp] 518 / 0 AT1G64950 636 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G088154 [exp] 512 / 8e-179 AT1G64950 639 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G087950 [exp] 510 / 5e-178 AT1G64950 642 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G088018 [exp] 499 / 8e-174 AT1G64940 605 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.005G079600 [exp] 498 / 4e-173 AT1G64940 575 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.013G076700 [exp] 490 / 6e-170 AT1G64940 592 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.013G076600 [exp] 488 / 3e-169 AT1G64940 578 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.008G099100 [exp] 466 / 1e-160 AT1G64940 540 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.001G330501 [exp] 465 / 4e-160 AT1G64940 569 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.015G006100 [exp] 426 / 1e-144 AT1G64940 484 / 7e-168 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10020359 pacid=23144148 polypeptide=Lus10020359 locus=Lus10020359.g ID=Lus10020359.BGIv1.0 annot-version=v1.0 ATGGAGGATTACTGGTTCCTTATCCTAGTCTCACTCTCAATCGTCTTCCTCTTCAAATCCTTCTTTAACCTCTTCTCATCCACCTCGGCCGAGAAATCAT CTCTTCCGCCTGGCCCCGCCAGGTTACCGTTCATTGGAAACCTCCTAATCTTCCGCTCGGGACTTGAACCGCTCCTTCGTTCCCTCCATGCTAAACACGG CCCTGCCGTCACACTTTACATCGGTAGCCGGCCTGTAATTTTTGTCGCCGATCGAGCCACTGCCCACTGCGCTTTGGTCCGGAACGGCGTTGTGTTCGCC GACCGGCCTCCGGCTTCTCCGGTGTCGCGAATCATCAACTCTGATCAGCACAACATCATCTTTTCACTCTACGGCCCGACGTGGCGGCTCCTTCGTCGCA ACCTCGCCGCTGCGATCCTCCACCCTTCCCGCGTGAAAACCTACTCCCAAGCCCGAGCCCAGGTTCTATATGGTGTCAAGAGCCGGGTGATCGGATATGG GTCGGATCCGGTTCTGGTCCAGGAAGTGTCCCAGTACGCGATGTTTTGCTTGCTGGCGTATATGTGCTTTGGGGACGAGCTGGAAGAGAAGCAGATATCG GACATCGAGCGAGTCGAGCGGAAGACAATTGCAAACTTCCACCGGTTCGCCATTCTCGATTCCGCTCTGTTTACGCGGATCTTTTTGAGGAGGCGGTGGT CAGAGCTTCTGCGGCTGAGGAAGGATCAGGAAGACGTACTGCTCCCGCTTATTCGGTCCAGAAAGGAACGGAGAAAGGAGAGAGCAAGCAAGATGAAAAA AGATGAAGACAACAACTATGTCACGGCATACGTCGACACACTCTTCGATCTGGAACTACCGGACAGGAAGCGGAAATTGACGGAGACGGAGATTGTTAGC CTCTGCAACGAGTTTCTCTTAGCCGGTGCGGACACCACCGCCATTGTGCTTCAATGGATCATGGCGAATTTGGTAAAATATCCTGATATACAAACCACGT TATTCGAAGAGATCAAATCCCTAATAGGCAAAACAGAGAAAACTAAAATTGAAGAGGAGGATCTACATAAATTGCCCTACCTGAAGGCGGTGGTGCTCGA AGGATTGCGCCTCCATCCACCGGGGCATTTCCTGCTGCCGCACACGGTAAAGTCGAAGACGAAGCTCGGCAACGACTACTCTGTGCCGGAGGATGTGATG GTGAATTTTATGGTGGCGGAGATAGGAAGGGATCCGGAAGTGTGGGAGGATCCAATGTCGTTTAAGCCCGAGAGGTTTTTGGACGACACAATGCCGTTTG ATATAATGTCTGCAAAAGAGATTAAAATGATGCCATTCGGCGCAGGGAGGAGGATGTGTCCCGCATATGGTTTGTCGCTGCTACACTTGGAGTACTTTGT GGCGAATTTGGTTTGGGGTTTCGAGTGGAAGACGGTTGATGGGGTGGGAGTCGATCTATCGGAAGAGACACAACCGTTCACGGTTGTGATGAAGAATCCG TTGTTGGCCCATGTCTCGCCGAGATTTGGGGTCAATTAA
AA sequence Show only first row Show all	>Lus10020359 pacid=23144148 polypeptide=Lus10020359 locus=Lus10020359.g ID=Lus10020359.BGIv1.0 annot-version=v1.0 MEDYWFLILVSLSIVFLFKSFFNLFSSTSAEKSSLPPGPARLPFIGNLLIFRSGLEPLLRSLHAKHGPAVTLYIGSRPVIFVADRATAHCALVRNGVVFA DRPPASPVSRIINSDQHNIIFSLYGPTWRLLRRNLAAAILHPSRVKTYSQARAQVLYGVKSRVIGYGSDPVLVQEVSQYAMFCLLAYMCFGDELEEKQIS DIERVERKTIANFHRFAILDSALFTRIFLRRRWSELLRLRKDQEDVLLPLIRSRKERRKERASKMKKDEDNNYVTAYVDTLFDLELPDRKRKLTETEIVS LCNEFLLAGADTTAIVLQWIMANLVKYPDIQTTLFEEIKSLIGKTEKTKIEEEDLHKLPYLKAVVLEGLRLHPPGHFLLPHTVKSKTKLGNDYSVPEDVM VNFMVAEIGRDPEVWEDPMSFKPERFLDDTMPFDIMSAKEIKMMPFGAGRRMCPAYGLSLLHLEYFVANLVWGFEWKTVDGVGVDLSEETQPFTVVMKNP LLAHVSPRFGVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020359 [exp]	0	1
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10025749 [exp]	2.8	0.9469
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10005078 [exp]	6.3	0.9185
AT3G26170		CYP71B19	"cytochrome P450, family 71, s...		Lus10018261 [exp]	6.5	0.9472
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10018262 [exp]	6.5	0.9465
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10005999 [exp]	6.6	0.9278
AT5G19970			unknown protein		Lus10019451 [exp]	9.5	0.9287
AT1G56010	NAC	NAC1, ANAC021, ...	Arabidopsis NAC domain contain...		Lus10042466 [exp]	10.6	0.9307
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10020498 [exp]	12.8	0.9414
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10001394 [exp]	13.0	0.9216
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10024941 [exp]	14.1	0.9295

Compare expression of checked genes

Lus10020359 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.