Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64940 576 / 0 CYP89A6 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) AT1G64950 568 / 0 CYP89A5 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) AT2G12190 566 / 0 CYP89A4 Cytochrome P450 superfamily protein (.1) AT1G64900 522 / 0 CYP89A2 "cytochrome P450, family 89, subfamily A, polypeptide 2", cytochrome P450, family 89, subfamily A, polypeptide 2 (.1) AT1G64930 521 / 0 CYP89A7 "cytochrome P450, family 87, subfamily A, polypeptide 7", cytochrome P450, family 87, subfamily A, polypeptide 7 (.1) AT5G61320 480 / 2e-166 CYP89A3 "cytochrome P450, family 89, subfamily A, polypeptide 3", cytochrome P450, family 89, subfamily A, polypeptide 3 (.1) AT3G03470 454 / 7e-156 CYP89A9 "cytochrome P450, family 87, subfamily A, polypeptide 9", cytochrome P450, family 87, subfamily A, polypeptide 9 (.1) AT3G10570 318 / 1e-102 CYP77A6 "cytochrome P450, family 77, subfamily A, polypeptide 6", cytochrome P450, family 77, subfamily A, polypeptide 6 (.1) AT1G11600 306 / 4e-98 CYP77B1 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) AT5G04660 300 / 7e-96 CYP77A4 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028654 [exp] 671 / 0 AT1G64940 562 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10020353 [exp] 665 / 0 AT1G64940 572 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10020359 [exp] 649 / 0 AT1G64940 550 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10010229 [exp] 584 / 0 AT1G64940 574 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10002138 [exp] 507 / 3e-176 AT1G64940 586 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10013067 [exp] 434 / 5e-148 AT1G64940 472 / 4e-163 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10009536 [exp] 325 / 5e-109 AT1G64940 290 / 1e-95 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10007660 [exp] 327 / 3e-106 AT1G11600 706 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Lus10034156 [exp] 323 / 2e-104 AT5G04660 679 / 0.0 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G088086 [exp] 600 / 0 AT1G64950 636 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G087950 [exp] 600 / 0 AT1G64950 642 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.005G079600 [exp] 594 / 0 AT1G64940 575 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.007G088154 [exp] 593 / 0 AT1G64950 639 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G088018 [exp] 587 / 0 AT1G64940 605 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.013G076600 [exp] 565 / 0 AT1G64940 578 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.013G076700 [exp] 565 / 0 AT1G64940 592 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.008G099100 [exp] 535 / 0 AT1G64940 540 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.001G330501 [exp] 518 / 0 AT1G64940 569 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.015G006100 [exp] 488 / 6e-169 AT1G64940 484 / 7e-168 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10020360 pacid=23144083 polypeptide=Lus10020360 locus=Lus10020360.g ID=Lus10020360.BGIv1.0 annot-version=v1.0 ATGGAGGATTACTGGTTCATAATCGTAATCTCCGTCTCAATCGCCTTCCTCCTCAAATCCTTCTTCAACCTCTTCTTCTTCCCCTCAGCTGGAAAAGGCA CACCTCCACCGGGTCCAGCTGGATTTCCCTTCATAGGAAACCTCCTCCTCCTCCGCGGATCATTCTCCGGACTAGAACCAATCCTCCGGTCCCTCCATGC CAAATATGGCCCTGTCGTCACCCTTCGCATCGGGCGCCGTGCTGCAATCTTCGTTGCTGACAGAGGCATCGCCCACCGCGTGCTGATCCAAAACGGTGCC ATGTTTGCTGATCGTCCGCCGGCTTCCGCCGTGACGCGAGTCACGAGCGCCAATCAACACAACATCAGCAGTTCGTTCTACGGTCCAACGTGGCGGCTAC TGCGGCGGAACCTCACGGCCGAGATCCTCCACCCTTCCCGCGTGAGATCCTACGGCTACGCTCGCGCGTGGGTGTTGGATGTGGTCAAAGGCCGGATCGG GCAGTCAGGATCGGAGCCGGTTAAGCTGATGGAAGAGTTTCAGTATGCGATGTTCTGTTTACTGGCGTTCATGTGCTTTGGGGATAAGCTTGAGGAGAAG CAGATATTGGAGATTGAACGAGTCGAGCGGGCGATGCTTCTGAACCTCCGCCGATTCAATTTGCTCAATTTTGCGCCTAGGATTACACGGATTTTGATGA GAAAGCGGTGGTCGGAGTTTCTCCGGTTACGGAAGGAGCAGGAAGACGTGCTCCTCCCTCTCATCCGAGCCAGAAAGGAATTGAGAAAGGAACAAGCAAT CAAGCCAAAAGAAGAAGGCGACAATTACGTCACGGCTTACTTAGACACGTTGTTCGATTTGGAATTACCGGACGAGAAGAGGAAATTGACGGAGGCGGAG TTGGTGAGCCTCTGCAACGAGTTCCTCAACGCCGGTACGGACACCACCGCCACCGCGTTACAGTGGATCATGGCGAATTTGGTCAAATATCCCGACCTCC AAGCAAAACTATTCGACGAAATCAAATCCTTAGAAATTGTTGAAGGAGCTGAAATTAAAGAAGAGGATTTGCATAGGCTTCCGTACTTGAAGGCGGTGGT TCTAGAAGGGTTGCGCCTCCATCCCCCGGGGCATTTCGTGCTGCCTCACACTGCAAGGACGCAGTCATCGGCTGAGCTCGGCGGCGGTTACACGGTGCCG GAGGGAGCCAGCGTGAACTTCATGGTGGCTGAGATGGGGCGGGATCCGAAGGTGTGGGAGGATCCGATGTCGTTCCGACCGGAGAGGTTTTTGGACGAAA CAACATCATTTGATATAACCTGCGGGAAGGAGATCAAAATGATGCCGTTTGGTGCTGGGAGGAGGATGTGTCCGGCGTATGGATTGGCGTTGTTGCATTT AGAGTATTTCATCGCGAATATGGTTTGGAGTTTCGAGTGGAAGGAGGTCGACAGTGAGGGTGTTGATCTAACGGAAGGGGAGCAGTTCACGGTGGTGATG AAGAATCCGTTGAAGGCTAATGTGTTGCCGAGGTTTGGGTTGGTTCTTTAG
AA sequence Show only first row Show all	>Lus10020360 pacid=23144083 polypeptide=Lus10020360 locus=Lus10020360.g ID=Lus10020360.BGIv1.0 annot-version=v1.0 MEDYWFIIVISVSIAFLLKSFFNLFFFPSAGKGTPPPGPAGFPFIGNLLLLRGSFSGLEPILRSLHAKYGPVVTLRIGRRAAIFVADRGIAHRVLIQNGA MFADRPPASAVTRVTSANQHNISSSFYGPTWRLLRRNLTAEILHPSRVRSYGYARAWVLDVVKGRIGQSGSEPVKLMEEFQYAMFCLLAFMCFGDKLEEK QILEIERVERAMLLNLRRFNLLNFAPRITRILMRKRWSEFLRLRKEQEDVLLPLIRARKELRKEQAIKPKEEGDNYVTAYLDTLFDLELPDEKRKLTEAE LVSLCNEFLNAGTDTTATALQWIMANLVKYPDLQAKLFDEIKSLEIVEGAEIKEEDLHRLPYLKAVVLEGLRLHPPGHFVLPHTARTQSSAELGGGYTVP EGASVNFMVAEMGRDPKVWEDPMSFRPERFLDETTSFDITCGKEIKMMPFGAGRRMCPAYGLALLHLEYFIANMVWSFEWKEVDSEGVDLTEGEQFTVVM KNPLKANVLPRFGLVL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020360 [exp]	0	1
AT4G10300			RmlC-like cupins superfamily p...		Lus10035660 [exp]	1.4	0.9557
AT2G18700		ATTPSB, ATTPS11	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10015509 [exp]	2.2	0.9560
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10030901 [exp]	3.0	0.9543
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012869 [exp]	4.2	0.9327
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10022292 [exp]	5.5	0.9479
AT5G24870			RING/U-box superfamily protein...		Lus10026941 [exp]	5.5	0.9479
AT5G09640		SNG2, SCPL19	SINAPOYLGLUCOSE ACCUMULATOR 2,...		Lus10007731 [exp]	6.3	0.9533
AT1G56290			CwfJ-like family protein (.1)		Lus10021219 [exp]	10.2	0.9447
AT5G03380			Heavy metal transport/detoxifi...		Lus10023924 [exp]	10.4	0.9439
AT5G38200			Class I glutamine amidotransfe...		Lus10028493 [exp]	10.6	0.9458

Compare expression of checked genes

Lus10020360 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.