Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17520 398 / 4e-137 MEX1, RCP1 MALTOSE EXCESS 1, root cap 1 (RCP1) (.1) AT5G17523 116 / 6e-30 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009540 [exp] 593 / 0 AT5G17520 467 / 3e-164 MALTOSE EXCESS 1, root cap 1 (RCP1) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G076100 [exp] 413 / 3e-143 AT5G17520 460 / 2e-161 MALTOSE EXCESS 1, root cap 1 (RCP1) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020364 pacid=23144117 polypeptide=Lus10020364 locus=Lus10020364.g ID=Lus10020364.BGIv1.0 annot-version=v1.0 ATGGCGGCAAATTCTCTCACGTTCTCGATCCACCACAATCCCTCACTCTCTCCTCATCCTCCTCCCTCCGTTTCTCTTCCTCCTCCATGGCGATTATCTT CCTTCAAGAAATCCTCCTCCGTCAGCTACTCCTTCGCCCCGTTACATCTCCGGCGACGCTCCTTTCCTCCTCTTTCCGCTCTCGAATCAGAGGCTCCTCG TCCTCTCCAGACCACTCATGAGGAGCATCCAGTGATAAAGAGATCTGAGAGCTTTCAACAATGGGATTCGTGGACGGCCAAGTTCGCCGCAGCTGCAAAT CTCCCGTTCTTGCTACTGCAAATACCTCAGATCACTCTCAACGCCCAGAACCTCTCCGCAGGGAACAATGCTGCTCTACTGGCAGTCCCATGGCTCGGAA TGTTGACTGGGTTGCTGGGAAATCTGTCACTTCTATCATACTTCGCCAAGAAAAGAGAGACGGAAGCAGCGGTGGTACAAACATTGGGAGTGATTTCCAG CTACATAGTGCTGACACAGCTCGCCATGGGAGAAGCAATGCCTAGGCCTCAATTTATCGCTACCTCAGCTGTTATTTTCGTCGGGTTGTTACTGAATTTC TTGAACTACTTCGGTAAGCTTAGCGCTGGGGTTTGGCGATTCTGGGAAGACTTCACTACCGTTGGTGGCCTCTCTGTTCTTCCTCAGATGATGTGGTCTA CGTTTGTCCCGTACCTTCCTGAGAGTATCTTGCCTAGTGCAATATCGTTTGCTATAGCTCTAACAGCTGTTATCATGGCACGGACAGGCAAGCTCTCGGA GAAAGGTGTCAAAATCATCGGGGGTCTATCTGGATGGACTGCAACTCTTCTTTTCATGTGGATGCCTGTAGCTCAAATGTGGACGAATTTCCTCAGACCA GAAAACATCAAAGGCTTATCAGCTTCCTCTATGCTACTTTCCATGATCGGAAATGGACTTATGATTCCCCGCTCGCTCCTCATTCGTGATCTGATGTGGT TCACTGGTTCATCCTGGGCCTCGTTTTGTTACGGATATGGAAACATTTTGTGCATGTACTGTTTCAGTGCAGTTAGCAAAGAATTCTTCCTGGGATCAAC AATTGGTTTGCTGTCATGGATAGGTATATCTCTATGGAGAGATGCTGTGGTTCACGGGTACAGCTCGCCTCTCAGCTCGCTGGGAGACTTGGTTTCAGGC TTGTAA
AA sequence Show only first row Show all	>Lus10020364 pacid=23144117 polypeptide=Lus10020364 locus=Lus10020364.g ID=Lus10020364.BGIv1.0 annot-version=v1.0 MAANSLTFSIHHNPSLSPHPPPSVSLPPPWRLSSFKKSSSVSYSFAPLHLRRRSFPPLSALESEAPRPLQTTHEEHPVIKRSESFQQWDSWTAKFAAAAN LPFLLLQIPQITLNAQNLSAGNNAALLAVPWLGMLTGLLGNLSLLSYFAKKRETEAAVVQTLGVISSYIVLTQLAMGEAMPRPQFIATSAVIFVGLLLNF LNYFGKLSAGVWRFWEDFTTVGGLSVLPQMMWSTFVPYLPESILPSAISFAIALTAVIMARTGKLSEKGVKIIGGLSGWTATLLFMWMPVAQMWTNFLRP ENIKGLSASSMLLSMIGNGLMIPRSLLIRDLMWFTGSSWASFCYGYGNILCMYCFSAVSKEFFLGSTIGLLSWIGISLWRDAVVHGYSSPLSSLGDLVSG L

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17520		MEX1, RCP1	MALTOSE EXCESS 1, root cap 1 (...		Lus10020364 [exp]	0	1
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10001783 [exp]	4.6	0.7845
AT2G20410			RNA-binding ASCH domain protei...		Lus10042558 [exp]	7.7	0.7769
AT4G15930			Dynein light chain type 1 fami...		Lus10037494 [exp]	8.2	0.7858
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10002482 [exp]	12.2	0.7830
AT5G15080			Protein kinase superfamily pro...		Lus10030796 [exp]	13.3	0.7922
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Lus10030349 [exp]	15.5	0.7664
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10020244 [exp]	17.3	0.7516
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10030989 [exp]	19.1	0.7667
AT1G68185			Ubiquitin-like superfamily pro...		Lus10035259 [exp]	25.3	0.6893
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10035387 [exp]	25.3	0.7572

Compare expression of checked genes

Lus10020364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.