Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64860 307 / 7e-100 SIGB, SIG2, SIG1, RPOD1, SIGA RNApolymerase sigma subunit 2, RNA POLYMERASE SIGMA SUBUNIT 1, sigma factor A (.1.2) AT1G08540 114 / 3e-27 ATSIG1, SIG1, SIGA, SIG2, SIGB, ABC1, ATSIG2 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) AT2G36990 109 / 1e-25 SIG6, SIGF, ATSIG6, SOLDAT8 SIGMA FACTOR 6, RNApolymerase sigma-subunit F (.1) AT5G13730 85 / 1e-17 SIGD, SIG4 sigma factor 4 (.1) AT5G24120 70 / 9e-13 ATSIG5, SIG5, SIGE SIGMA FACTOR 5, sigma factor E (.1) AT3G53920 69 / 3e-12 SIG3, SIGC SIGMA FACTOR 3, RNApolymerase sigma-subunit C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009541 [exp] 567 / 0 AT1G64860 438 / 2e-147 RNApolymerase sigma subunit 2, RNA POLYMERASE SIGMA SUBUNIT 1, sigma factor A (.1.2) Lus10020325 [exp] 125 / 7e-31 AT1G08540 534 / 0.0 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) Lus10005668 [exp] 119 / 7e-29 AT1G08540 425 / 2e-143 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) Lus10001339 [exp] 99 / 5e-22 AT1G08540 520 / 1e-180 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) Lus10013642 [exp] 99 / 6e-22 AT1G08540 498 / 4e-172 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) Lus10038823 [exp] 74 / 7e-14 AT5G24120 547 / 0.0 SIGMA FACTOR 5, sigma factor E (.1) Lus10014934 [exp] 71 / 1e-13 AT5G24120 250 / 1e-80 SIGMA FACTOR 5, sigma factor E (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G043300 [exp] 356 / 1e-118 AT1G64860 679 / 0.0 RNApolymerase sigma subunit 2, RNA POLYMERASE SIGMA SUBUNIT 1, sigma factor A (.1.2) Potri.013G075400 [exp] 329 / 4e-108 AT1G64860 680 / 0.0 RNApolymerase sigma subunit 2, RNA POLYMERASE SIGMA SUBUNIT 1, sigma factor A (.1.2) Potri.019G044200 [exp] 119 / 5e-29 AT1G08540 588 / 0.0 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) Potri.013G070500 [exp] 111 / 4e-26 AT1G08540 558 / 0.0 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) Potri.006G125700 [exp] 104 / 5e-24 AT2G36990 615 / 0.0 SIGMA FACTOR 6, RNApolymerase sigma-subunit F (.1) Potri.009G057200 [exp] 100 / 6e-23 AT5G13730 303 / 2e-99 sigma factor 4 (.1) Potri.012G031100 [exp] 73 / 1e-13 AT5G24120 584 / 0.0 SIGMA FACTOR 5, sigma factor E (.1) Potri.015G022100 [exp] 72 / 2e-13 AT5G24120 605 / 0.0 SIGMA FACTOR 5, sigma factor E (.1) Potri.006G234400 [exp] 72 / 2e-13 AT3G53920 417 / 5e-140 SIGMA FACTOR 3, RNApolymerase sigma-subunit C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF04542 [flax] [poplar] Sigma70_r2 Sigma-70 region 2
Representative CDS sequence Show only first row Show all	>Lus10020365 pacid=23144185 polypeptide=Lus10020365 locus=Lus10020365.g ID=Lus10020365.BGIv1.0 annot-version=v1.0 ATGTCCACAGCTGCAGTTATTGGACTCACTCCAGGCAAGAGACTCTTGAATTCTTCCTTCTTCCACTGTTCTGATCCTTCCGGAAGTGAACATGGACCGT CATCAGCTCACTCCAGAAGTCTTGTGGTTGCGAGAAGTTCATCATCATCATCGTCGTCGTTGAATTATGGTCACGGCTACCAGCCTTTGAAGCCTAGCAC ACATTCGGTTAAGGCCCTGAAAGACCATGTAGTGGTGGACACCGCTTCTCTTCCTTCAACATGGTTCGAGGCATTGAATGATTTCGAAGAAGAAGGGAAC AAAGAAGAAGGCGAAGGAGGAGAAGGAGAAGAAAGTTTTGATCTAGACATGGAAGCACTACTCTTGCTGCAGAAGTCTCTACTGGAGAAGCAATGGAACA TCACATTTGACAATGCAGATTCGCCTAAGAGGGGAGTGAAGAAGAAGGAGGTCATAGTTACGAGTTCCGGGGTCTCTGCACGGGAACGGAGAGTTAACAG GAAGAGGAAAGGCAATGTCGACGCGGGAAAATCGATGGGGGGATCGAATAATGGTACGTTGGAGACGCATACAGGGTTGACCCCGAATTTGCTGCATAAG CGGGTGGGCCGCGGTTACATGAATGGCGGTGTGGTGAGTGAAGAATACCTCACTCATGCTGAAGTTGTGCACCTCTCGAACATAATCAAAGCTGGTCTCG TGTTGGACGAACGTAAATCCAGGCTGAGAGAAAGATTGGGATGCGATCCCACCGATGAACAGCTGGCGGATTCCATGAAGATATCTCGATCCGAACTGCA CTCGAGACAGTTTGCTTTCTCTTTGGCGAGGGAGAAGCTGGCGATGAGCAATGTTCGCCTTGTTATGTCCATTGCTCAAAAGTATAACAGAATGGGTGCT AAAATGGGAGACCTTGTTCAGGGAGGGCTGATCGGGTTGCTGCGTGGAATAGAGAAATACGATTCGTCGAAGGGCTTTAAGATGTCGACCTATGTCTATT GGTGGATTCGCCAGGGTGTCTCGAAAGCTTTTCTTGAGAACACGAGTGCTTTCCCGCTTCCTAATCATCTGCATGGAAGGTTAAGCCTAATACGGAATGC AAGGATCAGATTAGAACAGGAAGGAATCGATCCAACCATTGATAAAATCGAAATCATGCTGCTTTACCAGCGCATCGGCGGTAAATGCCTCACTTGGGAA GACATCAGTAAACGCATAGGGTTGTCAAGGGAAAGAGTGAGGCAAGTTGGGCTAGTGGCATTTGAGAAGCTGAAACTTGCAGCAAGAAGAAAGAAGATGA ATGCCCTGCTGTTCAAACAACAGTGA
AA sequence Show only first row Show all	>Lus10020365 pacid=23144185 polypeptide=Lus10020365 locus=Lus10020365.g ID=Lus10020365.BGIv1.0 annot-version=v1.0 MSTAAVIGLTPGKRLLNSSFFHCSDPSGSEHGPSSAHSRSLVVARSSSSSSSSLNYGHGYQPLKPSTHSVKALKDHVVVDTASLPSTWFEALNDFEEEGN KEEGEGGEGEESFDLDMEALLLLQKSLLEKQWNITFDNADSPKRGVKKKEVIVTSSGVSARERRVNRKRKGNVDAGKSMGGSNNGTLETHTGLTPNLLHK RVGRGYMNGGVVSEEYLTHAEVVHLSNIIKAGLVLDERKSRLRERLGCDPTDEQLADSMKISRSELHSRQFAFSLAREKLAMSNVRLVMSIAQKYNRMGA KMGDLVQGGLIGLLRGIEKYDSSKGFKMSTYVYWWIRQGVSKAFLENTSAFPLPNHLHGRLSLIRNARIRLEQEGIDPTIDKIEIMLLYQRIGGKCLTWE DISKRIGLSRERVRQVGLVAFEKLKLAARRKKMNALLFKQQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Lus10020365 [exp]	0	1
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Lus10009541 [exp]	1.0	0.9531
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10023508 [exp]	1.4	0.9297
AT2G39420			alpha/beta-Hydrolases superfam...		Lus10003305 [exp]	6.0	0.9078
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10033538 [exp]	6.3	0.8973
AT2G23390			unknown protein		Lus10038137 [exp]	8.1	0.8916
AT2G02710		PLPC, PLPB, PLP...	PAS/LOV PROTEIN C, PAS/LOV PRO...		Lus10036711 [exp]	8.1	0.8621
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10027577 [exp]	10.2	0.8745
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10002534 [exp]	12.4	0.8484
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10034132 [exp]	13.0	0.8600
AT4G29670		ACHT2	atypical CYS HIS rich thiored...		Lus10040554 [exp]	14.4	0.8732

Compare expression of checked genes

Lus10020365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.