Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17910 44 / 0.0009 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009544 [exp] 1268 / 0 AT5G17910 43 / 0.001 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G068800 [exp] 172 / 1e-43 AT5G17910 437 / 3e-129 unknown protein Potri.019G044500 [exp] 85 / 1e-16 AT5G17910 296 / 1e-82 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020368 pacid=23144132 polypeptide=Lus10020368 locus=Lus10020368.g ID=Lus10020368.BGIv1.0 annot-version=v1.0 ATGGAAAACAACCACGATACCGATTCTTGCTTGTCACCTTCGGGCAGTATAGTTCCTGTTCATATCAACACTAGCGAAATCCTCTTGCGGATGGGACGTG GAGAAGAAGAATACAGCAGTATGTCGAGCTTGTCATCTCCGGACGAAAAGGCATCCAATGCGCAGAAGGTTCGGAATGGCGCTGCAAGCGTTTTGACAGA CGCTTCAGATCATCATCATCCTACAGGTTCAACAGTAGATGATCAGAGTAACCACGAGGAGCCGGTTTTCGATTCGAGCCCGCCTTCGCTGGACAAATTC CTGTCCTTTAAATCAATCTCCTCCGAAATTCAAGCGGAGATATCGGAGTTCGCTTCACTCTCTGCATTGCCACAACGTGTAGCGGCACAGCAGGTCGTTA CATCACGGGCCGGTGCCCAGCAAGTGCACTGGTCAGAGAAGTCTATGGTTGGTCCATCTTTTAACAATCATGAACAGACGGAACCAACTGTGCGGAATGT AGAGCCTGTGCCCATGCTGAGCACGAGCGGTGCAAGTCCAACAGAAGCATTTTGGTCACCGGAGTCTGCAGACAGTTTCAACTTCGAGGAAGACGTAACG AAAGAGATAGATGAAGGAATCCTGTCAGAATTAGACACGGTCGGGGATTTCAGAGTCAAAGAAGTCAATGGTGAACAGAATGTTGAGTCAGTACCGTCGG AGCTTCCGGTTCTTGAAGTTAGAACGGCTGAGGATATTGACTTGGCATTCAAGCAACTGCACGAAGGAGCCGAACTTAACGAAATTATCCTTCCCAGCAC AATTAAGCTGCAACAGTCAGCTGAGGACGACAAATTCAGAAGTCCTGATGCTCAACCCTCCACTCCATTGCAAGTTATTGATGCGAGGTTTCTAGAAGAT ATCGATGTTACAGTGATGCAACGAGCTTCCAAGGGTAACATAGTAACTGAGGAAGAGGAGGTTTCGATGACGGAGCTCCCAGTTCTTGAAGTTAGAACAG CTGAAGATATTGACTTGGCCTTCAAGCAACTTCACGAAGGAGTGGAACTCGAGGAGGTCATCGTTCCGAGCATGATTAAGCAACAATCGATCGAAGAAAG ATTTGGAAGTCCCGATGCACAACCTTCCACACCCTTACTAGTTATTGAAGCACGGTTTCCGGAAGATATTCATGTCGCCTTAATGCAACGAGCAGGACCA CGAACTGATGAAGGCATTTCGACAAAGGATCTGCCGGTTCTTGAAGTGAGAACGGCTGAAGATATTGACATAGCTTTGAAGCAGCTACACGAAGGAGCGG AAATCGAGGAGGTGATCCTTCCCAGTAAGATCAAGCAGCAGTCGATTGAAGACGAATTCGGAAGTCCCGAGGCGCAACCTTCTACTCCGTTGCACGTTGC TGAAGCAAGGTTTCTAGAAGATATTGATTTTGTTGTGATGCAACAAGCTTTGAAGGCCTGCATTGACGAGAAGATTTCTGGAAATCAGCTGCCGCTTCTT GAAGTAAGAACAGCGGAAGACATTGACTTGGCGTTCAAGCAACTTCACGAAGGAGTGGAAATCGAGGAGGTCATCCTTCCGAGCACGATCAAGGATCAGC TTTCGGCCGAAGATGAATTCGGAAGTCCCCGCGAGCAACCTTCTACACCGATGCAAGTTCTTCAAGTTCGAACAGCGGAAGACATCGACTTGGCATTCAA GCAACTTCATGAAGGAGCTAAACTCGAGGAGGTCATCCTCCCCAGCACAATTAAGCAGAAGTCGCTCGAAGAAGATGAGTATCGAAGTCTAAGAGAGCAG CCTTCCACTCCGTTGCAAGTCGTCGAAGCCAAACGTATAGACGAGATTCATTTCGCTGTCCTCGAAGATGCTTCTAAGGGTGGAAGCGTTGCACAACAGA AAATATCTGAATCGGAGCTTCCGGTTCTTGAAGTTCGAACGGCAGAAGACATTGACTTGGCCTTCAAGCAACTTCCCGAAGGAGCTAAACTCGAGGAGGT CATCCTTCCCAGCACAATTAAGCAGCAACCGTTCGAAGAAGACGAGTTTAGAAGTCCGCGCGAGCAGCCATCCACGCCGTTTCAAGTCGTTGAAGCCAAA CGTATAGACGATATTCATCTAGCTAATACCGCTTCTGACCGAGACCTCCCAGGATCATCCGAAAATGAGCTTCCATTTCTCGAAGTCAAAACAGCGGAAG ACATTGACATGGCCTTCAAGCAACTCCACGAAGGAGCAGAAGTCGACGAGGTCATCCTTCCCAGCACGATCAAGCAACGACAGCCAATCGAAGACGAATT CGGAAGTCCTAGCGAACAACCATCCACACCTTTGCAAGTTGTCGACGCAAGATTCGTAGAAGACATCCAGGCTGCATTGCTGCAACAAACAACAGAGAAT AACACCGATTTGAGGAACGCGCTCCCAGTTCTCGAGTTTAGAACAGCGGAGGACATTGACTTGGCGTTCAAGCAACTCCACGAAGGAGCAGAAGTCAACG AGGTCATCGTTCCCAGTCACATAAAGCAGCGGTCACTGGCTGAAGAAGACAAGTTCTTTAAGAGTCCCGATGAACAACCCTCTACTCCGTTGCAAGTCGT CGATGCGAGATTCGTCGAAGATATCGAAACTGCCGTCATGCAACATGCTTCTTCCAAAGGTAATCCATCTGCTTCTGCATAG
AA sequence Show only first row Show all	>Lus10020368 pacid=23144132 polypeptide=Lus10020368 locus=Lus10020368.g ID=Lus10020368.BGIv1.0 annot-version=v1.0 MENNHDTDSCLSPSGSIVPVHINTSEILLRMGRGEEEYSSMSSLSSPDEKASNAQKVRNGAASVLTDASDHHHPTGSTVDDQSNHEEPVFDSSPPSLDKF LSFKSISSEIQAEISEFASLSALPQRVAAQQVVTSRAGAQQVHWSEKSMVGPSFNNHEQTEPTVRNVEPVPMLSTSGASPTEAFWSPESADSFNFEEDVT KEIDEGILSELDTVGDFRVKEVNGEQNVESVPSELPVLEVRTAEDIDLAFKQLHEGAELNEIILPSTIKLQQSAEDDKFRSPDAQPSTPLQVIDARFLED IDVTVMQRASKGNIVTEEEEVSMTELPVLEVRTAEDIDLAFKQLHEGVELEEVIVPSMIKQQSIEERFGSPDAQPSTPLLVIEARFPEDIHVALMQRAGP RTDEGISTKDLPVLEVRTAEDIDIALKQLHEGAEIEEVILPSKIKQQSIEDEFGSPEAQPSTPLHVAEARFLEDIDFVVMQQALKACIDEKISGNQLPLL EVRTAEDIDLAFKQLHEGVEIEEVILPSTIKDQLSAEDEFGSPREQPSTPMQVLQVRTAEDIDLAFKQLHEGAKLEEVILPSTIKQKSLEEDEYRSLREQ PSTPLQVVEAKRIDEIHFAVLEDASKGGSVAQQKISESELPVLEVRTAEDIDLAFKQLPEGAKLEEVILPSTIKQQPFEEDEFRSPREQPSTPFQVVEAK RIDDIHLANTASDRDLPGSSENELPFLEVKTAEDIDMAFKQLHEGAEVDEVILPSTIKQRQPIEDEFGSPSEQPSTPLQVVDARFVEDIQAALLQQTTEN NTDLRNALPVLEFRTAEDIDLAFKQLHEGAEVNEVIVPSHIKQRSLAEEDKFFKSPDEQPSTPLQVVDARFVEDIETAVMQHASSKGNPSASA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10020368 [exp]	0	1
AT5G17910			unknown protein		Lus10009544 [exp]	1.7	0.9110
AT3G26935			DHHC-type zinc finger family p...		Lus10000146 [exp]	3.2	0.8789
AT1G60060			Serine/threonine-protein kinas...		Lus10012986 [exp]	4.0	0.9004
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Lus10024555 [exp]	5.5	0.8458
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Lus10032545 [exp]	5.5	0.8833
AT3G54030			Protein kinase protein with te...		Lus10021112 [exp]	5.5	0.8748
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Lus10039151 [exp]	7.5	0.8580
AT5G17910			unknown protein		Lus10020367 [exp]	7.7	0.8802
AT1G66830			Leucine-rich repeat protein ki...		Lus10033569 [exp]	8.2	0.8446
AT5G17980			C2 calcium/lipid-binding plant...		Lus10010658 [exp]	9.2	0.8615

Compare expression of checked genes

Lus10020368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.