Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31120 988 / 0 PRMT5, SKB1 ,ATPRMT5 PROTEIN ARGININE METHYLTRANSFERASE 5, SHK1 binding protein 1 (.1.2) AT3G06930 52 / 1e-06 ATPRMT4B ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4B, protein arginine methyltransferase 4B (.1.2) AT1G04870 50 / 3e-06 PRMT10, ATPRMT10 protein arginine methyltransferase 10 (.1.2) AT5G49020 47 / 5e-05 ATPRMT4A ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) AT3G20020 45 / 0.0001 ATPRMT6 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009545 [exp] 1199 / 0 AT4G31120 1058 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 5, SHK1 binding protein 1 (.1.2) Lus10043295 [exp] 50 / 3e-06 AT1G04870 553 / 0.0 protein arginine methyltransferase 10 (.1.2) Lus10019439 [exp] 50 / 4e-06 AT1G04870 551 / 0.0 protein arginine methyltransferase 10 (.1.2) Lus10043412 [exp] 50 / 5e-06 AT5G49020 770 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Lus10034172 [exp] 50 / 6e-06 AT5G49020 743 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Lus10010162 [exp] 42 / 0.001 AT3G20020 614 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G000500 [exp] 1035 / 0 AT4G31120 1063 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 5, SHK1 binding protein 1 (.1.2) Potri.006G281000 [exp] 897 / 0 AT4G31120 912 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 5, SHK1 binding protein 1 (.1.2) Potri.018G071200 [exp] 51 / 1e-06 AT1G04870 551 / 0.0 protein arginine methyltransferase 10 (.1.2) Potri.010G014600 [exp] 49 / 6e-06 AT5G49020 764 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Potri.008G222700 [exp] 49 / 7e-06 AT5G49020 762 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Potri.007G000300 [exp] 44 / 0.0003 AT3G20020 582 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05185 [flax] [poplar] PRMT5 PRMT5 arginine-N-methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10020369 pacid=23144076 polypeptide=Lus10020369 locus=Lus10020369.g ID=Lus10020369.BGIv1.0 annot-version=v1.0 ATGCCGCTAGGGGATAAGCCAGGATGGGAGAAGTCGGAATCTCGGTACTGTGGAGTGGAGGCAGAGTTCGACGACGACGTTGCCCGCCTTCTATCTGTCA ATCTAGACCTTGGCTCATTCGACTTCGTCGTAGCTCCTCTGATGAATCCAAGCTACCGGCCGAGTCTGATGCCAGAAAACAGCAGTGGATCGAGGGTCTT GCCGTTTGCAGGGTCTGACCTCGTCTTGAGTCCGTCGCAGTGGAGTAGTCACGTTGTCGGAAAAATTAGTTCCTGGATCGACTTGGATTCTGAAGATGAA ACTCTTCGGATTGATTCTGAAACTACTTTGAAGCAAGAGATAGCTTGGGCTAATCATCTCTCGTTACAGGCTTGCCTTCTTCCATCTCCAAAAGGTAAAT CATGCGCAAACTATGCTAGGTGCGTGAATGAGATTTTACAGGGCCTTAACAGTATGCAGCTGTGGCTTAGGATTCCCCTAACGAAGAGCGATGAGTTGTC TATGGGTGCGAGCTCCGATGACTCGGTTGATTCTTGGGAACGGTGGAATTCCTTCCGTATAATGTGTGAGCATCACACCCAGCTGTCTGTGGCTTTGGAT GTTCTTTTTTCTGTGCACCAGTCTTTTCTTACCAACGCACGTGGTTATCCATGTTTGTCAAAACGTCATCAGAATCTTGTATCCGGATTCTTCAATCATT CGATACAGATTGAGAATGCTTCTTGTTTAAATCTCTATTCTGTAGATATACAAAAACACCCACTTAGATCATACTTGGACTATATTGGTTATCTCTTCCA GAAGATGGATCCCCTTCCACAGCAAGAACGTTACGAGATTGGTTACAGGGATTTCTTGCAGTCCCCTTTGCAACCTCTTATGGATAATCTAGAGGCTCAA ACATACGAGACATTTGAAAAAGACTCTATGAAATATATTCAGTACCAAAGGGCAGTGTGTAAAGCTTTGTTGGACAGAGTCCCGGACGAAGAAGCCAATG TAACCACTGTTCTTATGGTTGTCGGAGCTGGACGTGGTCCTCTTGTGAGGGCATCTTTGCAGGCAGCTGAAGAAACAGGGCGCAAGATTAAGGTTTATGC AGTGGAGAAAAATCCAAATGCAGTTGTCACACTTCACAGTTTGGTAAAGCTGGAAGGATGGGAGGATGTTGTAACCATCATCTCATGTGATATGCGCTTC TGGGAGGCACCCGAGAAAGCAGATATTTTGGTCAGCGAACTGTTGGGTTCCTTTGGTGACAACGAGCTGTCTCCTGAATGTCTTGATGGTGCTCAGCGGT TCCTGAAACCGGATGGAATCTCGATACCATCATCGTACACTAGTTTCATCCAACCGGTGACTGCCTCGAAGTTATTTAACGATGTGAAGTCACATAAGGA CCTTGTCCATTTCGAGACGGCATATGTCGTCAAGCTGCATAACATAGCAAGACTCGCTCCACCTCAACCTGTCTTCACATTCACTCATCCAAATAACTCC GCGACAAAAAGCAACGAACGTTATACAAAGCTTCTTTTTGAACTACCTGCTGACACCGGATCAGCCATGGTACATGGGTTTGCTGGCTACTTTGACGCAG TATTGTACAAAGATGTTCATCTTGGCATCGAACCATCAACCGCAACACCAAACATGTTCAGCTGGTTTGCGATATTCTTCCCATTGAGGTCCCCGATATC CATTAAACCTGGTTCTTCGCTAGAAGTACATTTCTGGCGCTGCTGTGGATCTTCCAAGGTCTGGTACGAATGGTCCTTGGCAGCTCCAACGCCTAGTGCT ATACACAACACCAATGGCCGGTCGTACTGGGTTGGCCTTTAA
AA sequence Show only first row Show all	>Lus10020369 pacid=23144076 polypeptide=Lus10020369 locus=Lus10020369.g ID=Lus10020369.BGIv1.0 annot-version=v1.0 MPLGDKPGWEKSESRYCGVEAEFDDDVARLLSVNLDLGSFDFVVAPLMNPSYRPSLMPENSSGSRVLPFAGSDLVLSPSQWSSHVVGKISSWIDLDSEDE TLRIDSETTLKQEIAWANHLSLQACLLPSPKGKSCANYARCVNEILQGLNSMQLWLRIPLTKSDELSMGASSDDSVDSWERWNSFRIMCEHHTQLSVALD VLFSVHQSFLTNARGYPCLSKRHQNLVSGFFNHSIQIENASCLNLYSVDIQKHPLRSYLDYIGYLFQKMDPLPQQERYEIGYRDFLQSPLQPLMDNLEAQ TYETFEKDSMKYIQYQRAVCKALLDRVPDEEANVTTVLMVVGAGRGPLVRASLQAAEETGRKIKVYAVEKNPNAVVTLHSLVKLEGWEDVVTIISCDMRF WEAPEKADILVSELLGSFGDNELSPECLDGAQRFLKPDGISIPSSYTSFIQPVTASKLFNDVKSHKDLVHFETAYVVKLHNIARLAPPQPVFTFTHPNNS ATKSNERYTKLLFELPADTGSAMVHGFAGYFDAVLYKDVHLGIEPSTATPNMFSWFAIFFPLRSPISIKPGSSLEVHFWRCCGSSKVWYEWSLAAPTPSA IHNTNGRSYWVGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Lus10020369 [exp]	0	1
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Lus10009545 [exp]	1.0	0.9673
AT2G18330			AAA-type ATPase family protein...		Lus10028305 [exp]	4.2	0.9195
AT4G04940			transducin family protein / WD...		Lus10035842 [exp]	4.5	0.9451
AT3G18610		ATNUC-L2, PARLL...	PARALLEL1-LIKE 1, nucleolin li...		Lus10010202 [exp]	4.5	0.9355
AT3G18610		ATNUC-L2, PARLL...	PARALLEL1-LIKE 1, nucleolin li...		Lus10017403 [exp]	4.9	0.9385
AT4G02930			GTP binding Elongation factor ...		Lus10008161 [exp]	7.4	0.9210
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Lus10028574 [exp]	7.9	0.9176
AT2G18330			AAA-type ATPase family protein...		Lus10041751 [exp]	8.9	0.8987
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Lus10018881 [exp]	9.2	0.8770
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Lus10026158 [exp]	11.0	0.9083

Compare expression of checked genes

Lus10020369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.