Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31080 426 / 6e-148 Protein of unknown function (DUF2296) (.1), Protein of unknown function (DUF2296) (.2) AT2G24330 385 / 8e-132 Protein of unknown function (DUF2296) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009547 [exp] 734 / 0 AT4G31080 457 / 2e-160 Protein of unknown function (DUF2296) (.1), Protein of unknown function (DUF2296) (.2) Lus10009546 [exp] 700 / 0 AT4G31080 434 / 3e-151 Protein of unknown function (DUF2296) (.1), Protein of unknown function (DUF2296) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G281400 [exp] 446 / 1e-155 AT4G31080 399 / 2e-137 Protein of unknown function (DUF2296) (.1), Protein of unknown function (DUF2296) (.2) Potri.006G281200 [exp] 439 / 4e-153 AT4G31080 397 / 1e-136 Protein of unknown function (DUF2296) (.1), Protein of unknown function (DUF2296) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF10058 [flax] [poplar] zinc_ribbon_10 Predicted integral membrane zinc-ribbon metal-binding protein
Representative CDS sequence Show only first row Show all	>Lus10020370 pacid=23144095 polypeptide=Lus10020370 locus=Lus10020370.g ID=Lus10020370.BGIv1.0 annot-version=v1.0 ATGGCGGAGGAGAAGACGAGCAGCAGCAGCGCGGCGGAGAGTGAATCGAAGGAGGCGAAGACGAACAACGCTTCCGCTGTGAACAAGAAGAAGCGGAAGG GGTTTATGGCTAGGGTTTGGAATTCCGTTTTTAAACACGGCGGCGATGATTTCGAGAAGCGGCTGCAATACATTTCTAGAGAGGAAGCTTCTGTGTTGAC TAGGATGAAGAAGCGATCCATCACTTGGAGGAGGATGACCAGGAACCTTATTGCCTTCTCTGTTCTCTTGGAGATAGTTGCAGTTGGCTACGCTATTGTT ACAACTAGAGCTGATGATTTGGATTGGAAGATGAGAGCATTTCGTGTTTTGCCGATGTTTCTATTGCCAGCACTAAGCTCTGTTGCTTACTCCGGTCTTG TGAACTTCACAAAGATGTTGGATGAATCAAGTGCTCACTCCTCTAATAATGCAGGCGATCGCAGGGACGAGAAAACTCTGGAGAGGCTTCGAACTGAAAG GCAACAAAAAATTGATGAGCTGAAAGAGAAGACAAATTATTACACCACTCAGCAACTCATTCAGAGATATGATCCCGACCCAGCAGCAAAGGCGGCTGCT GCCACTGTCCTGGCATCAAAGTTAGGTGCAGACACAGGATTGAAGATGTACCTCGGAGATGAATCGGGATTCACCGAGTCCACAGCAAAGAGTAACGATG CAGAGTTTGTCCAAGCAAGTGGACTCCGAAACAGAAAGCAAGGTCAAGCCAGATCCAGAAGTGCAGGGAGCACTCCCGTGCACCCTTCCAACGACGGCAC TCCGCGATCAATCCTAAGCGAAGGCCCCCTCTCCGAGCACGACGAGCAGCTCGTCGTCGAGCATCACAACCCCCAGTCAGCTCCTGTAAGCGACGGAGGA TGGATTGCCCGATTAGCGGCTTTACTAGTAGGTGAAGACCCCGCCCACTCTTACGCACTCATTTGCGGCAACTGCCATATGCACAACGGCCTCGCTAGGA AAGAGGATTTCCCATTCATAACTTATTACTGCCCGCACTGTCACGCCCTCAATCAGCCGAAAAATTCAGCTTCCGTTTCGGGAGTCAGCACCCCTCCGAG TCTGAACCAGTCGAAACTGGGGAACATCGCTACAGTCAACGAGGAGGAGGACATCATCGACGCTCCTGTCGATTCCCCAACAGACAGCGTGGTTACGAGG AACAGCGTTGCTAATTCGAGTTCTGAAGCTCAGGAACAAGCCGGAAAGGCAGCATCGGGCGAATCGGCTAGCTGA
AA sequence Show only first row Show all	>Lus10020370 pacid=23144095 polypeptide=Lus10020370 locus=Lus10020370.g ID=Lus10020370.BGIv1.0 annot-version=v1.0 MAEEKTSSSSAAESESKEAKTNNASAVNKKKRKGFMARVWNSVFKHGGDDFEKRLQYISREEASVLTRMKKRSITWRRMTRNLIAFSVLLEIVAVGYAIV TTRADDLDWKMRAFRVLPMFLLPALSSVAYSGLVNFTKMLDESSAHSSNNAGDRRDEKTLERLRTERQQKIDELKEKTNYYTTQQLIQRYDPDPAAKAAA ATVLASKLGADTGLKMYLGDESGFTESTAKSNDAEFVQASGLRNRKQGQARSRSAGSTPVHPSNDGTPRSILSEGPLSEHDEQLVVEHHNPQSAPVSDGG WIARLAALLVGEDPAHSYALICGNCHMHNGLARKEDFPFITYYCPHCHALNQPKNSASVSGVSTPPSLNQSKLGNIATVNEEEDIIDAPVDSPTDSVVTR NSVANSSSEAQEQAGKAASGESAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31080			Protein of unknown function (D...		Lus10020370 [exp]	0	1
AT4G31080			Protein of unknown function (D...		Lus10009546 [exp]	1.0	0.8838
AT5G54400			S-adenosyl-L-methionine-depend...		Lus10037890 [exp]	1.7	0.7987
AT4G31080			Protein of unknown function (D...		Lus10009547 [exp]	2.8	0.8463
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035330 [exp]	8.2	0.7979
AT5G24810			ABC1 family protein (.1.2)		Lus10020168 [exp]	10.9	0.7740
AT5G03330			Cysteine proteinases superfami...		Lus10023019 [exp]	11.7	0.7490
AT1G36370		SHM7	serine hydroxymethyltransferas...		Lus10015471 [exp]	11.8	0.7838
AT2G24290			Protein of unknown function (D...		Lus10036299 [exp]	14.1	0.7583
AT2G06050		AtOPR3, DDE1, O...	DELAYED DEHISCENCE 1, oxophyto...		Lus10000966 [exp]	14.9	0.7789
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10029988 [exp]	17.1	0.7541

Compare expression of checked genes

Lus10020370 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.