Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26680 241 / 2e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G12775 151 / 1e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12700 150 / 4e-40 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT5G39710 149 / 8e-40 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12300 144 / 2e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 144 / 6e-38 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT3G22470 143 / 7e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 141 / 3e-37 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 141 / 3e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 140 / 5e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009548 [exp] 491 / 4e-173 AT4G26680 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10031857 [exp] 156 / 2e-44 AT5G58510 468 / 2e-158 unknown protein Lus10031287 [exp] 154 / 4e-41 AT5G58510 1122 / 0.0 unknown protein Lus10028943 [exp] 137 / 2e-38 AT5G01110 299 / 2e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007468 [exp] 145 / 3e-38 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012037 [exp] 141 / 4e-37 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012068 [exp] 141 / 7e-37 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042768 [exp] 140 / 1e-36 AT1G12700 418 / 8e-138 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10027914 [exp] 140 / 1e-36 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G166001 [exp] 262 / 2e-83 AT4G26680 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G045000 [exp] 156 / 1e-42 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 151 / 8e-41 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034200 [exp] 149 / 3e-40 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046100 [exp] 148 / 1e-39 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 147 / 2e-39 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050240 [exp] 147 / 3e-39 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 146 / 6e-39 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046200 [exp] 145 / 6e-39 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.016G025600 [exp] 145 / 1e-38 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10020371 pacid=23144168 polypeptide=Lus10020371 locus=Lus10020371.g ID=Lus10020371.BGIv1.0 annot-version=v1.0 ATGCTGTCTTCGAGGTGGCATTCACCTGGAGATTGGATAGACGATGAGATTGATGACAAGGCAGCATCCGGACTTTCAAGCTCGAAAGAGGATTGGCCTC CTCGAGGCAGACTTTCTCAAAGAATGTCTGATCAGGGAAATTTGTGGAGACAGATTTGGAACGACGCTCCGGCTTCGCCAGCTTATGATCAGAAACAACT ACTGGACCCAAATCGAGAAGGAGAGAAGCCGGTCGGCTCGAGAAAGCGGTCTGAGCTTTTTCGAGATATGGAGAATGTCGGGGTTTGTCCGGATGTTGCG TCGTACAATGTTGTGATTGCAGGGTATTGCAGGAAGGGGCTTTTGAGCTCGGCGATCAAGCTGAAAAGCTCGATGGAGAAGAAAGGTACGGTACCGAATG TGGTTACTTACAACACTCTGATCCATGGTTTCTGTAAAGAAGGGAGATTGCAGGAATCGAGGAAGCTACTCAGCGAGATGATAAAACTCGGAAATGTAGC TCCGAATGTCGTAACTTTTAACACGATGATGAACGGAGGGGAGAGCTGGGAGGTGAACGATACGCTTTATAAGGAGATGTTGAGTTTCGGGATCAAACCC GATATAGTGACCTACAATGCGTTGATTGGTGGATTGTGCAGGGAAGGGAAGACTAAGAGAGCTGCACATTTGGCTAAGGAGCTTGTGGATAAGGGGAAGA TGGCTCTGAATGCTTCGACTTATGCGGCACTTATCAGAGGGCAGTGTGTAAGGTACAATCCGGACCAAGGGTTCGAGGTGTATAAGGAGATGGTGAGGCG CGGGTTTTATCCGAATAGGGAGACGTTGGATGTCCTGGTGGGTGGGTTCTGTAAGAAGAAGGTTTTGGAAGGAGCGGGACGAGTGTTGTTGAAGATGTTT GAGAATGGTGCTACTCCTGTGTCGGAGTTTATAGTGGATACTTACAATGGACTTAGGGAGTTTGGGATGGATCATCTGGCTGCGGAGCTGCGGAGTGCAG TCGACGCTAGGAAACTTGGAATCGTCGAGCTCGGAGCATCTGATAATTGA
AA sequence Show only first row Show all	>Lus10020371 pacid=23144168 polypeptide=Lus10020371 locus=Lus10020371.g ID=Lus10020371.BGIv1.0 annot-version=v1.0 MLSSRWHSPGDWIDDEIDDKAASGLSSSKEDWPPRGRLSQRMSDQGNLWRQIWNDAPASPAYDQKQLLDPNREGEKPVGSRKRSELFRDMENVGVCPDVA SYNVVIAGYCRKGLLSSAIKLKSSMEKKGTVPNVVTYNTLIHGFCKEGRLQESRKLLSEMIKLGNVAPNVVTFNTMMNGGESWEVNDTLYKEMLSFGIKP DIVTYNALIGGLCREGKTKRAAHLAKELVDKGKMALNASTYAALIRGQCVRYNPDQGFEVYKEMVRRGFYPNRETLDVLVGGFCKKKVLEGAGRVLLKMF ENGATPVSEFIVDTYNGLREFGMDHLAAELRSAVDARKLGIVELGASDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26680			Tetratricopeptide repeat (TPR)...		Lus10020371 [exp]	0	1
AT3G12130	C3HZnF		KH domain-containing protein /...		Lus10012016 [exp]	2.4	0.7775
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Lus10037831 [exp]	4.5	0.7431
AT5G39020			Malectin/receptor-like protein...		Lus10008333 [exp]	6.3	0.7876
					Lus10006287 [exp]	11.8	0.7611
AT5G17850			Sodium/calcium exchanger famil...		Lus10034284 [exp]	12.1	0.7617
AT5G56990			unknown protein		Lus10029528 [exp]	20.3	0.7421
					Lus10038051 [exp]	22.0	0.7421
					Lus10003825 [exp]	23.5	0.7421
AT1G03670			ankyrin repeat family protein ...		Lus10000916 [exp]	23.7	0.5960
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10014062 [exp]	24.9	0.7421

Compare expression of checked genes

Lus10020371 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.