Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30470 226 / 6e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G23910 226 / 7e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G14700 164 / 4e-48 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G58490 149 / 5e-43 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G35420 132 / 2e-36 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT1G09480 130 / 2e-35 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 125 / 7e-34 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G02400 123 / 6e-33 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G19440 120 / 1e-31 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G15950 119 / 2e-31 IRX4, ATCCR1, CCR1 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009549 [exp] 423 / 4e-151 AT2G23910 172 / 4e-52 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10006885 [exp] 237 / 5e-77 AT2G23910 417 / 8e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10003780 [exp] 230 / 2e-74 AT2G23910 414 / 1e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022239 [exp] 165 / 1e-48 AT5G14700 374 / 4e-129 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041651 [exp] 154 / 1e-44 AT1G15950 532 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10024068 [exp] 149 / 2e-41 AT1G15950 534 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10008774 [exp] 127 / 2e-35 AT5G14700 253 / 5e-84 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009955 [exp] 129 / 4e-35 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026385 [exp] 127 / 2e-34 AT5G58490 533 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G079500 [exp] 327 / 8e-113 AT2G23910 261 / 1e-86 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G140700 [exp] 324 / 2e-111 AT2G23910 265 / 4e-88 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G093700 [exp] 319 / 2e-109 AT2G23910 264 / 1e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G178700 [exp] 249 / 3e-82 AT4G30470 416 / 1e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.018G100500 [exp] 247 / 2e-81 AT2G23910 438 / 4e-156 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G349600 [exp] 171 / 9e-51 AT5G14700 372 / 3e-128 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G105000 [exp] 151 / 2e-43 AT5G14700 213 / 2e-66 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.017G110500 [exp] 148 / 2e-42 AT5G14700 228 / 3e-72 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G045500 [exp] 140 / 2e-39 AT1G15950 505 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045000 [exp] 140 / 3e-39 AT1G15950 484 / 3e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01073 [flax] [poplar] 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family
Representative CDS sequence Show only first row Show all	>Lus10020372 pacid=23144087 polypeptide=Lus10020372 locus=Lus10020372.g ID=Lus10020372.BGIv1.0 annot-version=v1.0 ATGGCTTACGGCGGCGAAAACGATCGCGATCAAGTTGAAGATCAAGATCAAGCCCAGACCGTCTGCGTCATGAACGCATCCGGCCGACTAGGCTCCGCTC TCGTCCACAGCCTCCTCCTCCGTGGATACTCCGTCCACGCCGCAGTCCAACTCCACGGGGAATCGGAAGGATCGTCGTTCGTTAATATTGACAGCAGTTC GAGGTTGAGAGTGTTCGAGATGGACATGTTCGATTACCACGCGATAATGGAAGCTTTAAGAGGATGCTCTGCCTTGTTCTACTCCTTCGAGCCTCCTTCC GATCATCCTAATTACGATGAATCGATGGCGGAGGTGGAGGTAATGGCGGCTCACAACTCGCTGGAAGCATGTGCTCAGACGCCGACGGTGCATAAAGTTG TGTTCACTTCGTCGGCGACTGCTGTTCTCTGGAAAGAGGATCGATCGTCGTCGGCGGCTTGTTCGAAGGTGATTAATGAGTGTAGCTGGAGCAGTGTCCC ACTCTGCCGCAAATTCAAGCTATGGCATGCACTCTCGAAGACACTCTCAGAGAAGGCGGCGTGGGCGCTAGCGATGGACCGGGACATCAACATGGTCGCC GTCAACGGCGGCCTCCTCCTGACCTCCGACAATCACCAGCTCAGCCTCGCCAACCCATACCTGAAAGGAGCCGCCGAGATGTACGACGACGGGGTCTTAG TCACCGTGGACCTCGACTTTCTAGTCGAGGCTCACGTCCGCGTCTTCGAGGACTCCTCCTCGTTCGGCCGGTACCTATGCTTCGACCGCGTCGTGAACTC TCACGAGGAGGTCGCCAGCCTCGCCCGCCGCTTTTCGCCGGCGGGGGGCGAATAA
AA sequence Show only first row Show all	>Lus10020372 pacid=23144087 polypeptide=Lus10020372 locus=Lus10020372.g ID=Lus10020372.BGIv1.0 annot-version=v1.0 MAYGGENDRDQVEDQDQAQTVCVMNASGRLGSALVHSLLLRGYSVHAAVQLHGESEGSSFVNIDSSSRLRVFEMDMFDYHAIMEALRGCSALFYSFEPPS DHPNYDESMAEVEVMAAHNSLEACAQTPTVHKVVFTSSATAVLWKEDRSSSAACSKVINECSWSSVPLCRKFKLWHALSKTLSEKAAWALAMDRDINMVA VNGGLLLTSDNHQLSLANPYLKGAAEMYDDGVLVTVDLDFLVEAHVRVFEDSSSFGRYLCFDRVVNSHEEVASLARRFSPAGGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23910			NAD(P)-binding Rossmann-fold s...		Lus10020372 [exp]	0	1
AT4G20780		CML42	calmodulin like 42 (.1)		Lus10003239 [exp]	1.7	0.8650
AT3G54200			Late embryogenesis abundant (L...		Lus10003238 [exp]	3.3	0.8858
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10040796 [exp]	4.2	0.8837
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10039906 [exp]	5.3	0.8313
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10016528 [exp]	5.3	0.8608
AT4G14480			Protein kinase superfamily pro...		Lus10021882 [exp]	15.0	0.8121
AT3G57030			Calcium-dependent phosphotries...		Lus10019148 [exp]	16.1	0.8259
AT1G25450		KCS5, CER60	ECERIFERUM 60, 3-ketoacyl-CoA ...		Lus10041452 [exp]	17.2	0.8312
AT5G02430			Transducin/WD40 repeat-like su...		Lus10023797 [exp]	21.0	0.7310
					Lus10029087 [exp]	21.3	0.8153

Compare expression of checked genes

Lus10020372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.