Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16730 535 / 4e-178 Plant protein of unknown function (DUF827) (.1) AT3G02930 482 / 2e-158 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) AT1G65010 440 / 9e-137 Plant protein of unknown function (DUF827) (.1) AT4G27595 390 / 2e-119 Plant protein of unknown function (DUF827) (.1) AT4G40020 77 / 3e-14 Myosin heavy chain-related protein (.1) AT1G45545 47 / 5e-05 Plant protein of unknown function (DUF827) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009550 [exp] 1110 / 0 AT5G16730 571 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10000283 [exp] 71 / 1e-12 AT4G40020 190 / 6e-54 Myosin heavy chain-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G079000 [exp] 835 / 0 AT5G16730 619 / 0.0 Plant protein of unknown function (DUF827) (.1) Potri.019G047600 [exp] 789 / 0 AT5G16730 608 / 0.0 Plant protein of unknown function (DUF827) (.1) Potri.007G096600 [exp] 125 / 2e-29 AT4G40020 205 / 6e-58 Myosin heavy chain-related protein (.1) Potri.005G072400 [exp] 124 / 2e-29 AT4G40020 219 / 3e-63 Myosin heavy chain-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05701 [flax] [poplar] WEMBL Weak chloroplast movement under blue light
Representative CDS sequence Show only first row Show all	>Lus10020373 pacid=23144100 polypeptide=Lus10020373 locus=Lus10020373.g ID=Lus10020373.BGIv1.0 annot-version=v1.0 ATGGCTTCTAAATCCAAATCTGGATTGTCTGAAACTCCTACGAAGCCATCACCAGGAACTCCAAGAGCAAGTAAACTCAACAGAGGAGTTGCAGCTAAAT CAGATGCTGCTTCATCACCTTCTCCATTGCTTAGTTCTCGCTCCCCTGGATCGGCCAATTCGAAACCTACTGCTGCTGTTCGAAGAACAGCACCAAAGAC TGCCACCACCCCACCTGAAGTAAAACCCATGGCTCGTGTGGCGAACGCAAAGGGATCGGAGCTGCAGGCTCAGTTGAACGCGGTTCAGGAAGATCTCAAG AAGGCCAAGGAGAAGATCTCGGCGATCGAGAAGGAGAAGGAGCAAGCAGTTACCGAGCTGAAACTCGCTCAGCAGGTTGCCGAGGAGGCGAATGTGAAGC TGCAAGAGGCCATGGTGGCTCAGAAGCGAGCCGAGGAGGATTCGGAGATCGAGAAGTTTCGAGCTGTCGAGTTGGAGCAGGCCGGGATCGAGGCTGTGAA TCTGAAGGAACAGGAATGGAAGAAGGAGATCGAAACTGTGAAGAACCAACACGAATCGGACGCTGCTGCTAATCTTCTTCTTACTACTCAGGAGCTCGAA AGAATGAAGCAAGAAATGGATATGGTGACTGATGCTAAGAATCAAGCGCTTAGCCATGCCGATGATGCTACTAAGCTTGCCGAGAGTCGTGCAGAGAAGG TCGAGTCTCTCTCCGCTGAGTTGGTCCGGTTGAGAGAGTTGCTTGATGCCAAAGTTGAGACTGAGACAAGCGAGAGCAACGAGATGGTCTCGAAGCTGAA TGAGGAGATAGATTCATTGAGTCGAGAGCTCGAGAGAGCGAAAATGGTTGAAGACAAGTTGATGGAGAAAGAAGCCTATATCGAACAGCTCAACGTCGAG GTGGAAGCAGCGAAGATGGCCGAATCGTATGCACGTAACCAGGCCGAGGAATGGAAGAGCAAAGTGGAGCAGTTGGAGTCCAGAGTCAGAGAAGCAACCA AGTTGGAGAAGTCTGCATCGGATTCACTGGGGTCTGTCATGAAACAGCTCGAAGAGAATCACGATATGCTGCACGATGCGGAGACTGAGATTACTGCTCT CAGGGAGAAGGTTGGACTGCTGGAAATGACATTAGCTAGACAGAAGGGCGATCTCGAGGAATCAGAACGCCGTGCGGTTCGAGCACAGGAGCAAGCGTCG GGGATGGTGAAGGAGGTCGAGTCTCTCAAGTCGGAGGTGGAGACCTTGAAAGAAGAAAAGATTCAGGCTTTGAACAATGAGAAGCTTGCTGCTTCGAGCG TCCAAGGTCTGCTCGAAGAGAAGAACCAACTGATCACCGAGCTCGAGAATTACAAGAAGGAGGAAGTAAAGAGCAAGCAGGCAATGGAGAGTTTAGCTTC AGCATTGCATGAAGTGTCTGCCGAAGCAAGGGAAGCGAAAGAAAAACTGGCGTACACTGAAACAGATCGTGAAAACTACGAAGCGCAGATCGAAGATCTG AGATCGGTGTTGAAGGAGTCAAACGAGAGGTACGAGAACATGATAGACGATGCGAACCATGAAATCGATGTCCTGAAGTGCTCGGTCGAAGATTTGCAGA TGTCCAAGTCTGAATGGGAGGTCAAAGAACAGAATCTCTTGGATTGCGTGAAGAAATCGGGCGAAGAAAACGCGGCTTTGGAGAAAGAAATAGATAGGCT GTTGAATTTGGTCAAGCATACGGAAGAAGAAGCTTGTGATGCAAGGCAGGAAGAGGCTAGTCTGAAGAACAGCTTAAAGGATGCTGAAGTAGAAGCAGTT TCGTTGCGGGAAGCTCTCGAAGATGCGAAATCCGAGAGCTTGAAGCTGAAGGAGAGTCTGATGGACAAAGAGAATGAACTCCAGAGCGTCCTTCAGGAGA ACGAGGAGCTGCACGTGAGAGAGGACGATTCTCTTAAGAGAATCGAGGAATTGTCCAAGTTGCTCAAAGAAGCTCAGCCGTCTGAAAGGCGAAATGAGGA GGAAGAGAACTGTGAGCTCTCCGACAGCGAGAAGGACTACGATCTGCTCCCCAAAGTGGTCGAGTTCTCGGAAGAAAACGGACACGTAGCTGAAGAGAAA CCAGCCAAGCTAGACCACGACGAGGAACACAGCAACGGTTCCTTAAACAACAAGGCAACACCACCAACTGCTGCCGAAATGGCTTCTTCCGTTGGTGGCG AAGAGACTAAAGAAGACGACACAGTGGAGATCGAGTTCAAGATGTGGGAGAGCTGCAAGATTGAGAAGAAAGAGTTCTCCCCGGAGAGATCAGAAGAGCA CGAACAGCTGGAGTCATCCTTCGAGGAAGAAGCCGTTTCCAAACCGGACCAGGCTAACGAGATTTCTTCAAGCGAGAACCCTAACGATGAAGAATGTGGT CCCAAGCAAGAACCAGAGCAGCTGAATGAGGTGCAGAAGAAGAAGAAGAAACCATTACTTTCGAAATTCGGAAACCTGCTCAAGAAGAAGAGCAGTACCA CCAGTACCACTTCCTCACCTACTCCTACTGGTACTACTACTGCAAACCAGAAACCATAG
AA sequence Show only first row Show all	>Lus10020373 pacid=23144100 polypeptide=Lus10020373 locus=Lus10020373.g ID=Lus10020373.BGIv1.0 annot-version=v1.0 MASKSKSGLSETPTKPSPGTPRASKLNRGVAAKSDAASSPSPLLSSRSPGSANSKPTAAVRRTAPKTATTPPEVKPMARVANAKGSELQAQLNAVQEDLK KAKEKISAIEKEKEQAVTELKLAQQVAEEANVKLQEAMVAQKRAEEDSEIEKFRAVELEQAGIEAVNLKEQEWKKEIETVKNQHESDAAANLLLTTQELE RMKQEMDMVTDAKNQALSHADDATKLAESRAEKVESLSAELVRLRELLDAKVETETSESNEMVSKLNEEIDSLSRELERAKMVEDKLMEKEAYIEQLNVE VEAAKMAESYARNQAEEWKSKVEQLESRVREATKLEKSASDSLGSVMKQLEENHDMLHDAETEITALREKVGLLEMTLARQKGDLEESERRAVRAQEQAS GMVKEVESLKSEVETLKEEKIQALNNEKLAASSVQGLLEEKNQLITELENYKKEEVKSKQAMESLASALHEVSAEAREAKEKLAYTETDRENYEAQIEDL RSVLKESNERYENMIDDANHEIDVLKCSVEDLQMSKSEWEVKEQNLLDCVKKSGEENAALEKEIDRLLNLVKHTEEEACDARQEEASLKNSLKDAEVEAV SLREALEDAKSESLKLKESLMDKENELQSVLQENEELHVREDDSLKRIEELSKLLKEAQPSERRNEEEENCELSDSEKDYDLLPKVVEFSEENGHVAEEK PAKLDHDEEHSNGSLNNKATPPTAAEMASSVGGEETKEDDTVEIEFKMWESCKIEKKEFSPERSEEHEQLESSFEEEAVSKPDQANEISSSENPNDEECG PKQEPEQLNEVQKKKKKPLLSKFGNLLKKKSSTTSTTSSPTPTGTTTANQKP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16730			Plant protein of unknown funct...		Lus10020373 [exp]	0	1
AT4G31990		AAT3, ATAAT1, A...	ASPARTATE AMINOTRANSFERASE DEF...		Lus10001753 [exp]	3.2	0.8270
AT3G28715			ATPase, V0/A0 complex, subunit...		Lus10030672 [exp]	4.5	0.8177
AT5G16730			Plant protein of unknown funct...		Lus10009550 [exp]	9.5	0.8398
AT5G07620			Protein kinase superfamily pro...		Lus10042988 [exp]	10.0	0.7911
AT1G77140		ATVPS45, VPS45	vacuolar protein sorting 45 (....		Lus10028622 [exp]	11.5	0.8231
AT1G78530			Protein kinase superfamily pro...		Lus10005569 [exp]	12.6	0.8072
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10019414 [exp]	13.4	0.8157
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10022790 [exp]	15.7	0.8075
AT3G48260		WNK3	with no lysine (K) kinase 3 (....		Lus10041947 [exp]	16.0	0.7975
AT5G35570			O-fucosyltransferase family pr...		Lus10021557 [exp]	17.4	0.7980

Compare expression of checked genes

Lus10020373 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.