Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24360 631 / 0 Protein kinase superfamily protein (.1) AT4G31170 613 / 0 Protein kinase superfamily protein (.1.2.3.4) AT1G62400 277 / 2e-90 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT4G38470 261 / 2e-81 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT5G58950 254 / 3e-79 Protein kinase superfamily protein (.1) AT4G35780 254 / 6e-79 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT2G17700 252 / 2e-78 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT3G27560 235 / 5e-74 ATN1 Protein kinase superfamily protein (.1) AT3G63260 233 / 1e-72 ATMRK1 Protein kinase superfamily protein (.1.2) AT5G40540 228 / 2e-71 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009550 [exp] 531 / 2e-179 AT5G16730 571 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10020018 [exp] 275 / 7e-89 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10015436 [exp] 271 / 2e-86 AT5G58950 572 / 0.0 Protein kinase superfamily protein (.1) Lus10011173 [exp] 271 / 2e-86 AT5G58950 567 / 0.0 Protein kinase superfamily protein (.1) Lus10015541 [exp] 274 / 9e-85 AT1G62400 623 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10025442 [exp] 265 / 7e-84 AT5G58950 510 / 2e-178 Protein kinase superfamily protein (.1) Lus10042122 [exp] 261 / 1e-83 AT1G62400 404 / 7e-141 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10023989 [exp] 265 / 9e-83 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10022653 [exp] 259 / 1e-81 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G001800 [exp] 695 / 0 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1) Potri.006G280000 [exp] 694 / 0 AT4G31170 677 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.018G001900 [exp] 655 / 0 AT2G24360 648 / 0.0 Protein kinase superfamily protein (.1) Potri.006G279900 [exp] 652 / 0 AT2G24360 642 / 0.0 Protein kinase superfamily protein (.1) Potri.012G080000 [exp] 280 / 1e-91 AT1G62400 405 / 9e-142 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.015G075200 [exp] 278 / 1e-90 AT1G62400 404 / 2e-141 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.004G001900 [exp] 269 / 6e-87 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.011G022800 [exp] 269 / 6e-87 AT1G62400 613 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.005G082200 [exp] 272 / 3e-86 AT5G58950 607 / 0.0 Protein kinase superfamily protein (.1) Potri.007G085300 [exp] 265 / 1e-83 AT5G58950 604 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10020374 pacid=23144039 polypeptide=Lus10020374 locus=Lus10020374.g ID=Lus10020374.BGIv1.0 annot-version=v1.0 ATGATCGGCAAGATGGAGGCTCCAAAGTTTACTGGTCTTTTGGGGGGGAACAACCACAATGATAACAATTACTATGATTTGACCCAAGGGTTTTATCATA AACTTGGTGAGGGTACGAACATGTCCATCGACAGTTTACAAACAAGCAATGCTGGTGGTTCTGTGTCGATGTCGGTGGATAACAGCAGTGTCGGGTCCAA TGATTCTCTAACCCATATTTTGAGCCATCCTGGTCTAAAACCTGTTGCCCAAAACTATGGCGGAACTGTTGGCCATAGCTTAATCCGTCCAGGTAGGGTT AGCCATGTACTGAATGATGATGCATTGGCTCAAGCATTGATGGATCCTAGATATCCAACTGAAGGCTTGGAGAATTATGATGACTGGACTATTGATCTGA GAAAACTCAACATGGGGATGGCATTTGCACAAGGAGCTTTCGGCAAGTTATATAGAGGGACATACAATGGAGAAGATGTTGCAATCAAGATTCTGGAGAG GCCAGAGAATAGCCCCGAGAAGGCACAAGTGATGGAGCAGCAGTTTCAACAGGAAGTCATGATGCTTGCAACCTTAAAGCATGCAAACATTGTCCGCTTT ATTGGCGGATGCCGGAAGCCTATGGTTTGGTGTATAGTCACCGAATATGCAAAGGGAGGCTCAGTTAGACAGTTTCTGACCAGGAGGCAGAATAGGGCTG TGCCACTGAAGTTGGCAGTCAAGCAGGCCTTGGATGTTGCTAGGGGAATGGCTTATGTCCACCATCTTGGCTTCATTCACCGTGATCTCAAGTCAGATAA CCTTCTGATTGCAGCTGATAGGTCTATAAAAATCGCTGATTTTGGTGTTGCACGGATTGAGGTGCAGACCGAGGGGATGACTCCAGAAACTGGAACATAC CGCTGGATGGCTCCGGAGATGATCCAGCACCGCCCGTACACACAGAAGGTGGACGTGTACAGCTTCGGCATCGTCCTCTGGGAGCTGATAACAGGGATGC TCCCTTTCCAGAACATGACAGCAGTGCAAGCAGCGTTCGCTGTGGTCAACAAAGGAGTCAGGCCCGTGATACCCAACGACTGCCTCCCTGTGCTGAACGA GATCATGACCCGCTGCTGGGACACCAACCCCGAAGTCCGCCCTCCTTTCTCTGAGGTCGTCCGAATGCTCGAATGTGCTGAAACTGAGATCATGACGACC GTTCGCAAGGCTCGTTTCAGGTGCTGCATACAGCCCATGACGGTCGACTGA
AA sequence Show only first row Show all	>Lus10020374 pacid=23144039 polypeptide=Lus10020374 locus=Lus10020374.g ID=Lus10020374.BGIv1.0 annot-version=v1.0 MIGKMEAPKFTGLLGGNNHNDNNYYDLTQGFYHKLGEGTNMSIDSLQTSNAGGSVSMSVDNSSVGSNDSLTHILSHPGLKPVAQNYGGTVGHSLIRPGRV SHVLNDDALAQALMDPRYPTEGLENYDDWTIDLRKLNMGMAFAQGAFGKLYRGTYNGEDVAIKILERPENSPEKAQVMEQQFQQEVMMLATLKHANIVRF IGGCRKPMVWCIVTEYAKGGSVRQFLTRRQNRAVPLKLAVKQALDVARGMAYVHHLGFIHRDLKSDNLLIAADRSIKIADFGVARIEVQTEGMTPETGTY RWMAPEMIQHRPYTQKVDVYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKGVRPVIPNDCLPVLNEIMTRCWDTNPEVRPPFSEVVRMLECAETEIMTT VRKARFRCCIQPMTVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31170			Protein kinase superfamily pro...		Lus10020374 [exp]	0	1
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Lus10013397 [exp]	1.7	0.9178
AT5G26751		ATSK11 ,SK 11	ARABIDOPSIS THALIANA SHAGGY-RE...		Lus10031440 [exp]	4.5	0.8961
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10037203 [exp]	4.7	0.9163
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10040625 [exp]	5.7	0.9013
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Lus10029011 [exp]	6.3	0.8499
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Lus10015756 [exp]	7.7	0.8699
AT5G18610			Protein kinase superfamily pro...		Lus10012814 [exp]	12.2	0.8657
AT4G13630			Protein of unknown function, D...		Lus10022791 [exp]	13.4	0.8733
AT4G29960			unknown protein		Lus10001629 [exp]	13.7	0.8875
AT3G53490			unknown protein		Lus10003989 [exp]	15.9	0.8864

Compare expression of checked genes

Lus10020374 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.