Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59630 561 / 0 diphthamide synthesis DPH2 family protein (.1) AT1G79790 253 / 5e-79 AtcpFHy1 flavin mononucleotide hydrolase 1, Arabidopsis thaliana chloroplast FMN hydrolase 1, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT5G62030 89 / 2e-18 diphthamide synthesis DPH2 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009552 [exp] 942 / 0 AT3G59630 572 / 0.0 diphthamide synthesis DPH2 family protein (.1) Lus10009551 [exp] 235 / 6e-73 AT1G79790 194 / 8e-63 flavin mononucleotide hydrolase 1, Arabidopsis thaliana chloroplast FMN hydrolase 1, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10039108 [exp] 99 / 1e-21 AT5G62030 636 / 0.0 diphthamide synthesis DPH2 family protein (.1) Lus10038750 [exp] 96 / 8e-21 AT5G62030 574 / 0.0 diphthamide synthesis DPH2 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G123700 [exp] 647 / 0 AT3G59630 578 / 0.0 diphthamide synthesis DPH2 family protein (.1) Potri.010G143000 [exp] 268 / 8e-85 AT1G79790 296 / 9e-102 flavin mononucleotide hydrolase 1, Arabidopsis thaliana chloroplast FMN hydrolase 1, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.019G041300 [exp] 105 / 1e-23 AT5G62030 623 / 0.0 diphthamide synthesis DPH2 family protein (.1) Potri.002G077200 [exp] 43 / 0.0005 AT4G21470 561 / 0.0 riboflavin kinase/FMN hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01866 [flax] [poplar] Diphthamide_syn Putative diphthamide synthesis protein CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10020375 pacid=23144134 polypeptide=Lus10020375 locus=Lus10020375.g ID=Lus10020375.BGIv1.0 annot-version=v1.0 ATGTCGCCCCCCGCACCCGCCGCTCAGAGGAGCCGGAAGCTCCCCGTACTGCTCTTCGACATCATGGACACCGTCGTTCGCGATCCTTTCTACGAGGACA TCCCTTCCTTCTTCGGAATGTCTATGAAAGAGCTGATTGAATGTAAGCATCCGACTTCGTGGATGGAGTTTGAGAAGGGGATGATCGATGAGGTGGAGCT TTACTCCAAGTTCTTCAAAGATGGAAGGTCGTTTGATCTGGAAGGAATCTTGACTCAAGAATGTACGGCTTTGGCAGGGTTAAAAACCTGTATGAAGAAA GGATACCGTTACTTGGACGGTATGAAGGAGTTGCTTGATACCCTAAAGCAGAAGAACTACGAGATGCATGCTCTTACAAATTATCCTGTATGGTACGAAA TGATCGAGGAGAAGCTGGATATCTCAGCATACTTATCTTGGAGCTTCTGTTCATGCACAATTGGAAAGAGAAAGCCCGATCCTGATCTGTACTTAGAAGT TGTGAAACAGCTTCAAGTTGATCCAGGCAGCTGCATTTTCGTCGATGACCGGTTAATCAGGTTGCCGCCAGCCCGCCACTTTCACTCCGCTCTCCGTCGC CAGACGCCAACCAGTTCAGGCGAAAAAAGCAAAGTCGAATTCCGCCGAACAAAATTCAAAGCGAAGCAGCTCTGCTTCAACATGGATTTAGAAGGGAGCT ACGAGATTGAAGCCACCGCCGATTTCATTCACGGCCGCAACTTTTCCAGGGTTGCTTTACAGTTTCCGGATGAGTTATTGAAGGATTCGATGAGAGTGGT GGGTGCATTGAGGGACAAGCTTCAGTTACTGAAGGAATCGGAGCAGAAGGATGGTGCTAAAGAGGTTAGACTGTTTGTAATGGCGGATGCAACTTACGGA AGCTGCTGTATAGATGAAGTTGGCACTTCGCATATTGATGCCGAATGTGTTGTTCATTATGGGCATACGTGTCTCAGCCGGACCTCAACTGTTCCGGCAT TCTTTGTTCTCGGAAAAGCTTCAATCGACGCTGCAAAGTGTGCTGAAAGTTTGTCGAATTACGCATCAACAAGTGGAAGACCTGTTTTGGTACTCTACGG TCTGGAGTATGCACATTCTATCTCATATGTCCAGGAGACAGTTGCTGCGTTGAAATCCACTTGTGAATATCACTTTGCTGATGTATCTTGTCGGGTTACG AATCCTCCAAAGCAATGTGAAACTTCCGAGGAGACCCCGAGTCGAGACTCTGATTGTAACACCGGCGGTGAGCTTGGTGTCACACCTGGTTTTTCAGGTA GCATCGGAGGCTTGGTTTGGACTCTGCCCGAAGGGCACAACATGGAGGATTACTCGCTTTTTTGGATGGGGGCTGATAATCCAGCGTTCGCCAACGCTGT ACTGACATTCAATGGATGCGAAATAGTCAGATACGACGTGGACCGAGATTGGTTGATGACAGACTTATCTTCACAAAGAAGGATACTCAAGAAGAGATAT TACCTAGTGGAGAAGGCAAAAGATGCCAACATCGTTGGGATATTGGTTGGGACTCTTGGAGTAGCTGGTTACCTCAATATGATCCGTCAGATGAAGGACC TAATAACTGCTGCAGGGAAGAAGGTTTACACTTTCGTCATGGGACGACCAAACCCGGCAAAACTTGCTAACTTCCCCGAGTGTGATGTTTTTGTCTATGT CTCGTGCCCTCAAACTGCCCTCCTAGACAGTAAAGAGTTCCTAGCTCCTGTCATTACTCCTTTTGAAGCAATGCTAAGTTTCAACAGAGGAAGCGAATGG ACCGGAGCATATGTGATGAAGTTCTGGGACTTGATTGATACCCCTCTAGCAGCAGATGTTGAACACGATCCTGAAGAAGCTCGATTTTCACTTATACAAG GTAGATACGTCGAGGACCTCAATTCTATCGAGAACACCGATGAGGAGGAAGAGAACGGAAAGGTTATGGCTTTGTCAAGCACGATGGAGAAAGCTCTCCA ACTGCGCGACCAGGACACCACGCTGATCAACATCAATGGGAAATTCGCTAGATCGGGGGCCGAGTATTTTGCGACGAGAACTTATCACGGCCTGGACATG TACGACAACAGCAGTTCGCCAGTGGAGCCGTTCTTGATTGGTAGGAGTGGTAAAGCCTCAGGCTACCAAAACGAAAGCAACAAGACGGATAACTGA
AA sequence Show only first row Show all	>Lus10020375 pacid=23144134 polypeptide=Lus10020375 locus=Lus10020375.g ID=Lus10020375.BGIv1.0 annot-version=v1.0 MSPPAPAAQRSRKLPVLLFDIMDTVVRDPFYEDIPSFFGMSMKELIECKHPTSWMEFEKGMIDEVELYSKFFKDGRSFDLEGILTQECTALAGLKTCMKK GYRYLDGMKELLDTLKQKNYEMHALTNYPVWYEMIEEKLDISAYLSWSFCSCTIGKRKPDPDLYLEVVKQLQVDPGSCIFVDDRLIRLPPARHFHSALRR QTPTSSGEKSKVEFRRTKFKAKQLCFNMDLEGSYEIEATADFIHGRNFSRVALQFPDELLKDSMRVVGALRDKLQLLKESEQKDGAKEVRLFVMADATYG SCCIDEVGTSHIDAECVVHYGHTCLSRTSTVPAFFVLGKASIDAAKCAESLSNYASTSGRPVLVLYGLEYAHSISYVQETVAALKSTCEYHFADVSCRVT NPPKQCETSEETPSRDSDCNTGGELGVTPGFSGSIGGLVWTLPEGHNMEDYSLFWMGADNPAFANAVLTFNGCEIVRYDVDRDWLMTDLSSQRRILKKRY YLVEKAKDANIVGILVGTLGVAGYLNMIRQMKDLITAAGKKVYTFVMGRPNPAKLANFPECDVFVYVSCPQTALLDSKEFLAPVITPFEAMLSFNRGSEW TGAYVMKFWDLIDTPLAADVEHDPEEARFSLIQGRYVEDLNSIENTDEEEENGKVMALSSTMEKALQLRDQDTTLININGKFARSGAEYFATRTYHGLDM YDNSSSPVEPFLIGRSGKASGYQNESNKTDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59630			diphthamide synthesis DPH2 fam...		Lus10020375 [exp]	0	1
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Lus10002672 [exp]	4.2	0.8883
AT3G21820		SDG36, ATXR2	SET DOMAIN PROTEIN 36, histone...		Lus10015102 [exp]	4.2	0.9170
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Lus10020150 [exp]	9.5	0.8946
AT5G50320		EAST1, AtELP3, ...	HISTONE ACETYLTRANSFERASE OF T...		Lus10001102 [exp]	16.5	0.8832
					Lus10003602 [exp]	17.7	0.8575
AT5G61930		APO3	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10041934 [exp]	18.8	0.8693
AT1G11320			unknown protein		Lus10013574 [exp]	20.9	0.8939
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010067 [exp]	23.8	0.8902
AT1G43710		EMB1075	embryo defective 1075, Pyridox...		Lus10028592 [exp]	28.3	0.8886
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10016578 [exp]	29.0	0.8597

Compare expression of checked genes

Lus10020375 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.