Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27650 612 / 0 PEL1 PELOTA, Eukaryotic release factor 1 (eRF1) family protein (.1) AT3G58390 549 / 0 Eukaryotic release factor 1 (eRF1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009553 [exp] 741 / 0 AT4G27650 635 / 0.0 PELOTA, Eukaryotic release factor 1 (eRF1) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G204500 [exp] 630 / 0 AT4G27650 635 / 0.0 PELOTA, Eukaryotic release factor 1 (eRF1) family protein (.1) Potri.004G092600 [exp] 435 / 1e-152 AT4G27650 411 / 2e-143 PELOTA, Eukaryotic release factor 1 (eRF1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0267 [flax] [poplar] S11_L18p PF03463 [flax] [poplar] eRF1_1 eRF1 domain 1 CL0101 [flax] [poplar] PELOTA PF03465 [flax] [poplar] eRF1_3 eRF1 domain 3 CL0267 [flax] [poplar] S11_L18p PF03464 [flax] [poplar] eRF1_2 eRF1 domain 2
Representative CDS sequence Show only first row Show all	>Lus10020376 pacid=23144038 polypeptide=Lus10020376 locus=Lus10020376.g ID=Lus10020376.BGIv1.0 annot-version=v1.0 ATGAAAATCGTCAGGAGAGATTACACCCACGATGGCCCTGGGAGCATCAAGATGACGCCAGTTGATTCGGATGATCTATGGTATGCTTACAATCTGATTG TTCCCGGAGATTCTGGAGTTTCCCGTTTTGGCCGTTACTGTCAGGTGTTGAGGGAGACGGCATCCGGTAGTAGAGAAGCTGAGCGAGTGAAGCTCAAGTT GGAAGTCAAAGTTGAGGGCATTGAGTATGATAAAGATGGGGGAGTCTTGCGAATTCGAGGAAAGAATATCCTCGAGAATGAACATGTGAAGATTGGGCAG TTCCATACTTTGGAAATCGAGCTGCATCGTCCCTTTGTTTTGAGAAAAAAAGTTTGGGATTCGTTGGCATTGGAGGTTATCAAGCAAGCCTCAGATCCTA CTGCAAGTGCTGATGTGACTGTGCTTTTATTGCAAGAAGGATTAGCTCAAATTTTTCTGGTCGGTAGAAGTGTGACAACTTCACGTTCACGAATAGAAAC CCCAATACCCCGTAAGCATGGGCCTGCAATTGCTGGTTATGATTCGGCACTCAATAAGTTTTTTCAGAATGTCTTACAGGCTTTCCTGAAACATGTCGAC TTCAATGTCGTCCGCTGTGCTGTGATCGCGAGTCCCGGTTTTACAAAGGACCAATTTCACCGCTATATGTTGCTAGAGGCAGAGAGAAAACAACTGAGAA CCATTATTGAGCATAAGTCCAAGATCATTCTGGTGCATACTACCTCTGGATACAAGCATAGTCTTAGAGAGGTGCTCGATGCACCAAATGTCATGAATAT GATAAAAGACACTAAAGCAGCAGAAGAGGTCCGAGTTCTGAAGGATTTCTATGACATGCTCTCACATGATCCCGATCGGGCATGCTATGGACCGAAGCAT GTGCAAGTTGCTAACGAACGGTTAGCCGTCCAGACTCTCCTCATCACAGACGATCTCTTCAGGAATGCTGATATACCAACGAGACAAAAATACGTCGAAC TAGTCAAGTCAGTAAAGAGTAGTGGCGGAAAAGCTCATATCTTTTCCACAATGCACTCCTCGGGCGAGCAACTGGCGCAGTTGACTGGCATTGCTGCAAT CCTCCGATTCCCGCTACCAGACCTCGACGACATCGAAATGTGA
AA sequence Show only first row Show all	>Lus10020376 pacid=23144038 polypeptide=Lus10020376 locus=Lus10020376.g ID=Lus10020376.BGIv1.0 annot-version=v1.0 MKIVRRDYTHDGPGSIKMTPVDSDDLWYAYNLIVPGDSGVSRFGRYCQVLRETASGSREAERVKLKLEVKVEGIEYDKDGGVLRIRGKNILENEHVKIGQ FHTLEIELHRPFVLRKKVWDSLALEVIKQASDPTASADVTVLLLQEGLAQIFLVGRSVTTSRSRIETPIPRKHGPAIAGYDSALNKFFQNVLQAFLKHVD FNVVRCAVIASPGFTKDQFHRYMLLEAERKQLRTIIEHKSKIILVHTTSGYKHSLREVLDAPNVMNMIKDTKAAEEVRVLKDFYDMLSHDPDRACYGPKH VQVANERLAVQTLLITDDLFRNADIPTRQKYVELVKSVKSSGGKAHIFSTMHSSGEQLAQLTGIAAILRFPLPDLDDIEM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27650		PEL1	PELOTA, Eukaryotic release fac...		Lus10020376 [exp]	0	1
AT1G03350			BSD domain-containing protein ...		Lus10012761 [exp]	2.0	0.8766
AT2G21600		ATRER1B	endoplasmatic reticulum retrie...		Lus10041766 [exp]	3.5	0.8699
AT1G03140			splicing factor Prp18 family p...		Lus10042599 [exp]	6.9	0.8470
AT5G48160		OBE2	OBERON2, Protein of unknown fu...		Lus10012327 [exp]	7.5	0.8666
AT5G48160		OBE2	OBERON2, Protein of unknown fu...		Lus10006372 [exp]	8.1	0.8324
AT1G03140			splicing factor Prp18 family p...		Lus10022049 [exp]	10.5	0.8208
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Lus10019288 [exp]	16.2	0.8627
AT1G67340			HCP-like superfamily protein w...		Lus10037021 [exp]	18.2	0.8075
AT5G26990			Drought-responsive family prot...		Lus10015214 [exp]	21.5	0.8272
AT5G21970			Ubiquitin carboxyl-terminal hy...		Lus10016529 [exp]	25.0	0.7935

Compare expression of checked genes

Lus10020376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.