Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65090 59 / 1e-09 unknown protein AT5G36100 51 / 4e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009554 [exp] 225 / 3e-70 AT1G65090 126 / 9e-34 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G052300 [exp] 63 / 1e-10 AT5G36100 85 / 3e-18 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020377 pacid=23144045 polypeptide=Lus10020377 locus=Lus10020377.g ID=Lus10020377.BGIv1.0 annot-version=v1.0 ATGGCCAAAATTGTATCGCCGACGAAGCCTGCTGCTGATAGGTGCTCCTTCGAGATAGTTTATCGAACCAGGAAGCGAACCAGTTGTTCTCCAGAGACAT TCTTGCGCAATGGAGCAATCAGGAGATATGGTTACTGGTTATGCTTGGTCGGTCTTGTTATAAATTTTAATTTCTCATCTGGGTTTGCCGTGCTGTTGAT TCTTTCCCTCCTCTCCAGTTATTGGGAAAAGAATTCAGGCATGGAACAGGAGAAGTATCAGGAAATGAACGGATCTGAGTCAGCTTCTGAGGTCGAATCC CCTTACGCTAGCAAGGGGGTAAGCTTGGGGAAGATAATACTGATGGCTGGTTTAGTGTTTTCCTCTGCACCAGTTGTTGTACCTGGAGTTCTAGTGGTTT CTGCAATTGGGTTTGCTTGTTCCGTTCCATATGGCCTTTTCTTGGCAACCCATTCGTTCACTCAGACTCTCTTGACCAAACTTCTCCCTCTCCGAACCCT TACTCGTCCGGATGGAGATGAAAGTTTGGAAGAACAGAAGAACCGGAGCGAGGCATACGAAGATGAAGTTGCGGAGAAAGATGGGTATGGAGACGAGGAG GAGGCTAGGAGCGTGGTTGTGGAAGGCGAAACCGACCAGGAAAAGAATGAGAAGCTTGAAAAGGAAGCACCTTCGAAGGAGAGTCAAGCGGAAGCTTTGA AGAATGAGGATAAAACAGCTGATGCTCCATCTGAAGAGACTGAGCATGGTACTACTACTGGCTCGAGTGAGGATGCTGCTGTTTCGCAATCTATTGCTGA AAATGAAGGCGGCGGAGATGCTAATCAGGATGACGCAGATGCGACTTCAACCGAGGGGAATTATAGACTTGTGTTCGAGGTTTTGGATTACATCTGGTTT ATGTCTGCTAGAAAGTCTTGTTACGTCAGATTCTTCCGGGAGACGAATTTCGAAATCAAACCTGAATCTAAGTGTTTACCAGAACCTTTTGAATTCCTCC ATTTTGAGTTACCTTATTGTCATGTAGTGAATGGTGAGGAGAAGCTATGGGAGCAGATGGACGGCATGCGAGCAATAGTGGGATACTCGGGCTCTCGTCA CTCAACTTGTTTGGAAGAACTCGCGGCGCTGTATGTTTTCGTAGGAGTTGAACTTGAACGACCTGCTACATCGTTCAGTGACCCCGTGATCTAG
AA sequence Show only first row Show all	>Lus10020377 pacid=23144045 polypeptide=Lus10020377 locus=Lus10020377.g ID=Lus10020377.BGIv1.0 annot-version=v1.0 MAKIVSPTKPAADRCSFEIVYRTRKRTSCSPETFLRNGAIRRYGYWLCLVGLVINFNFSSGFAVLLILSLLSSYWEKNSGMEQEKYQEMNGSESASEVES PYASKGVSLGKIILMAGLVFSSAPVVVPGVLVVSAIGFACSVPYGLFLATHSFTQTLLTKLLPLRTLTRPDGDESLEEQKNRSEAYEDEVAEKDGYGDEE EARSVVVEGETDQEKNEKLEKEAPSKESQAEALKNEDKTADAPSEETEHGTTTGSSEDAAVSQSIAENEGGGDANQDDADATSTEGNYRLVFEVLDYIWF MSARKSCYVRFFRETNFEIKPESKCLPEPFEFLHFELPYCHVVNGEEKLWEQMDGMRAIVGYSGSRHSTCLEELAALYVFVGVELERPATSFSDPVI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65090			unknown protein		Lus10020377 [exp]	0	1
AT4G26740		CLO1, ATPXG1, A...	CALEOSIN1, ARABIDOPSIS THALIAN...		Lus10023732 [exp]	11.9	0.9840
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10032263 [exp]	17.1	0.9839
					Lus10032770 [exp]	18.8	0.9529
					Lus10008326 [exp]	20.5	0.9837
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024627 [exp]	23.7	0.9836
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10042765 [exp]	23.9	0.8901
AT3G44540		FAR4	fatty acid reductase 4 (.1.2)		Lus10019187 [exp]	26.9	0.9834
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Lus10039979 [exp]	28.5	0.9346
AT3G42880			Leucine-rich repeat protein ki...		Lus10037688 [exp]	29.5	0.9833
AT2G44350		CSY4, ATCS	CITRATE SYNTHASE 4, Citrate sy...		Lus10006943 [exp]	31.9	0.9833

Compare expression of checked genes

Lus10020377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.