Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31800 902 / 0 CYP97A3, LUT5 LUTEIN DEFICIENT 5, "cytochrome P450, family 97, subfamily A, polypeptide 3", cytochrome P450, family 97, subfamily A, polypeptide 3 (.1) AT3G53130 482 / 1e-164 CYP97C1, LUT1 LUTEIN DEFICIENT 1, CYTOCHROME P450 97C1, Cytochrome P450 superfamily protein (.1) AT4G15110 431 / 4e-144 CYP97B3 "cytochrome P450, family 97, subfamily B, polypeptide 3", cytochrome P450, family 97, subfamily B, polypeptide 3 (.1) AT2G44890 156 / 5e-41 CYP704A1 "cytochrome P450, family 704, subfamily A, polypeptide 1", cytochrome P450, family 704, subfamily A, polypeptide 1 (.1.2) AT2G26710 149 / 2e-38 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT5G23190 149 / 3e-38 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT1G57750 147 / 7e-38 MAH1, CYP96A15 MID-CHAIN ALKANE HYDROXYLASE 1, "cytochrome P450, family 96, subfamily A, polypeptide 15", cytochrome P450, family 96, subfamily A, polypeptide 15 (.1.2) AT2G45510 147 / 1e-37 CYP704A2 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) AT5G24910 145 / 4e-37 ELA1, CYP714A1 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) AT3G14680 145 / 5e-37 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023891 [exp] 455 / 3e-153 AT3G53130 852 / 0.0 LUTEIN DEFICIENT 1, CYTOCHROME P450 97C1, Cytochrome P450 superfamily protein (.1) Lus10014399 [exp] 448 / 1e-150 AT3G53130 850 / 0.0 LUTEIN DEFICIENT 1, CYTOCHROME P450 97C1, Cytochrome P450 superfamily protein (.1) Lus10039040 [exp] 434 / 5e-145 AT4G15110 880 / 0.0 "cytochrome P450, family 97, subfamily B, polypeptide 3", cytochrome P450, family 97, subfamily B, polypeptide 3 (.1) Lus10009232 [exp] 167 / 5e-43 AT2G45510 639 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10033044 [exp] 154 / 9e-40 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10038896 [exp] 148 / 7e-38 AT2G45510 582 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10026085 [exp] 145 / 4e-37 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10022279 [exp] 143 / 2e-36 AT2G23180 449 / 4e-154 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10025756 [exp] 143 / 3e-36 AT2G46950 578 / 0.0 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G088100 [exp] 954 / 0 AT1G31800 921 / 0.0 LUTEIN DEFICIENT 5, "cytochrome P450, family 97, subfamily A, polypeptide 3", cytochrome P450, family 97, subfamily A, polypeptide 3 (.1) Potri.006G119800 [exp] 477 / 1e-162 AT3G53130 834 / 0.0 LUTEIN DEFICIENT 1, CYTOCHROME P450 97C1, Cytochrome P450 superfamily protein (.1) Potri.006G006200 [exp] 426 / 3e-142 AT4G15110 877 / 0.0 "cytochrome P450, family 97, subfamily B, polypeptide 3", cytochrome P450, family 97, subfamily B, polypeptide 3 (.1) Potri.006G154500 [exp] 168 / 3e-45 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.018G070900 [exp] 167 / 1e-44 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139200 [exp] 160 / 3e-42 AT2G26710 369 / 6e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G014407 [exp] 159 / 4e-42 AT2G26710 389 / 3e-130 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.017G114200 [exp] 157 / 3e-41 AT5G38450 724 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Potri.004G100400 [exp] 153 / 1e-39 AT5G38450 734 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Potri.010G139600 [exp] 152 / 2e-39 AT2G26710 395 / 6e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10020380 pacid=23144070 polypeptide=Lus10020380 locus=Lus10020380.g ID=Lus10020380.BGIv1.0 annot-version=v1.0 ATGGCGTCTCCCGCCACTTTCCACTCCTTTCAAGTCCCTTCCTCCACCGCCGCCACTCACCCTTCTTCCTCTAACTCCAGGGTCCATTTCAGCTCCTTGA AACCCGCATTTCCAGGTGAAACTCTTCGTCTCAGTCCTTTATTTGAATCCCACGGTGGCATCTGGTTAATATTTATTTGGAATATTTCTTTCGGTTCAGT GAAATCCAGAGGTCTAGGAGTTATAGCTTGTGCCTCCTCAAATGGAAGGAAACCGGAGGAGAAGATTCTCGAAGAGAAGCGTCGAGCTGAGCTGTCAGCT CGAATTGCTTCCGGAGCTTTCACCGTTGAGCAATCTGGCTTTCCATCTGTGGTGAAGAACGGATTGTCGAAATTGGGGGTTCCAGAAGGGATTCTGGAGG TGATGTTCAAGTGGGCTGATGGTGAGACGGGCTATCCGAAGATCCCGGAGGCAAAAGGCGCCATTAGTGCTATCAGGAGTGAAGCTTTCTTCATACCTTT GTATGAGCTTTTCCTCACTTATGGTGGGATTTTCAGGTTGACATTTGGCCCAAAGTCTTTCTTGATAGTTTCTGATCCCACCATAGCAAAGCACATCTTG AAGGACAACTCAAAGGGTTATTCTAAGGGTATTTTAGCAGAAATTTTGGAGTTTGTCATGGGTAAAGGTTTGATTCCTGCTGATGGGGAAATATGGCTTG TTCGAAGACGAACTGTTGTCCCAGCATTACATCAAAAGTATGTAGCAGCTATGATTAGCCTATTCGGAGCAGGAACCGATCGGCTTTGCCAGAAACTCGA CAAAGCTGCATCCGACGGTGAAGACGTAGAGATGGAGTCGCTCTTCTCTCGTTTGACGTTGGATATCATCGGGAAAGCTGTGTTCAATTACGACTTTGAC TCTCTTACTAATGACACTGGTATAGTAGAGGCTGTTTACACAGTTTTAAGAGAAGCGGAGGATCGAAGCGTTTCGCCGATTCCTACTTGGGAGATCCCTA TTTGGAAGGACATCTCGCCTCGGCAGAAGAGAGTTAATTCCGCTCTTGGATTGATCAATGGAATACTTGATGAGCTGATTGGCATATGCAAGAGGATGGT GGACGAAGAAGAGCTACAGTTCCACGAAGAATACATGAACGAACAAGATCCTAGCATTCTTCACTTCTTGTTGGCTGGCGGGGATGATGTCACCAGCAAG CAACTCCGAGACGATTTGATGACGATGCTTATAGCCGGACATGAAACTTCTGCCGCAGTTTTAACATGGACGTTTTACTTGTTGTCCAAGAATCCAAGCG CCTTGGTGAAACTGCAGAATGAGGTTGATGCAGTATTAGGCGACCGGTTTCCGACCATAGAAGACATGAAGAAGCTCAAATATACAACTCGAGTCATTAA CGAGTCTCTTAGGCTCTATCCACAACCTCCTGTCTTGATTCGACGATCTCTCGATAATGACATGCTTGGAAAGTACCCTATAAAAAGGGGCGAAGACATC TTCATTTCCGTGTGGAACCTCCATCGTAGTCCTCATAACTGGCAAGACGCCGATAAGTTCAATCCCGAAAGATGGCCTTTGGACGGACCGAATCCAAACG AGACGAACCAAAATTTCAGTTACTTGCCGTTTGGTGGGGGGCCGCGGAAATGTGTAGGAGACATGTTCGCAACTTTCGAGACAGTAGTAGCTGTGGCTAT GCTGGTCCGAAGATTCAACTTTCAAATGGCACTCGGAGCTCCTCCGGTGGAAATGACAACAGGGGCAACAATCCACACAACCAAAGGGTTGAATATGACT GTTACAAGGAGGATCGTGCCTCCTATAATGCCGAATCTCGATACACAGTTGCCCAATGTGGATTCTTCGACAACACCATCATCATCATCGAAAACCCAAA AGGGTGAAGTTTCTCCTGCTCGTTCCTGA
AA sequence Show only first row Show all	>Lus10020380 pacid=23144070 polypeptide=Lus10020380 locus=Lus10020380.g ID=Lus10020380.BGIv1.0 annot-version=v1.0 MASPATFHSFQVPSSTAATHPSSSNSRVHFSSLKPAFPGETLRLSPLFESHGGIWLIFIWNISFGSVKSRGLGVIACASSNGRKPEEKILEEKRRAELSA RIASGAFTVEQSGFPSVVKNGLSKLGVPEGILEVMFKWADGETGYPKIPEAKGAISAIRSEAFFIPLYELFLTYGGIFRLTFGPKSFLIVSDPTIAKHIL KDNSKGYSKGILAEILEFVMGKGLIPADGEIWLVRRRTVVPALHQKYVAAMISLFGAGTDRLCQKLDKAASDGEDVEMESLFSRLTLDIIGKAVFNYDFD SLTNDTGIVEAVYTVLREAEDRSVSPIPTWEIPIWKDISPRQKRVNSALGLINGILDELIGICKRMVDEEELQFHEEYMNEQDPSILHFLLAGGDDVTSK QLRDDLMTMLIAGHETSAAVLTWTFYLLSKNPSALVKLQNEVDAVLGDRFPTIEDMKKLKYTTRVINESLRLYPQPPVLIRRSLDNDMLGKYPIKRGEDI FISVWNLHRSPHNWQDADKFNPERWPLDGPNPNETNQNFSYLPFGGGPRKCVGDMFATFETVVAVAMLVRRFNFQMALGAPPVEMTTGATIHTTKGLNMT VTRRIVPPIMPNLDTQLPNVDSSTTPSSSSKTQKGEVSPARS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31800		CYP97A3, LUT5	LUTEIN DEFICIENT 5, "cytochrom...		Lus10020380 [exp]	0	1
AT1G59960			NAD(P)-linked oxidoreductase s...		Lus10010720 [exp]	1.0	0.8077
AT4G33480			unknown protein		Lus10003851 [exp]	2.8	0.7998
AT2G42070		ATNUDX23, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10029289 [exp]	4.5	0.7360
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Lus10036857 [exp]	4.9	0.7695
AT3G15020		mMDH2	mitochondrial malate dehydroge...		Lus10038323 [exp]	6.9	0.7638
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10037561 [exp]	8.9	0.6677
AT5G62620			Galactosyltransferase family p...		Lus10036686 [exp]	9.2	0.7553
AT1G02910		LPA1	LOW PSII ACCUMULATION1, tetrat...		Lus10036345 [exp]	9.7	0.7622
AT2G21340			MATE efflux family protein (.1...		Lus10042074 [exp]	14.3	0.7285
AT3G24300		ATAMT1;3, AMT1;...	ammonium transporter 1;3 (.1)		Lus10004761 [exp]	14.9	0.7204

Compare expression of checked genes

Lus10020380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.