Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07020 754 / 0 UGT80A2, SGT UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) AT1G43620 556 / 0 UGT80B1, TT15 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) AT5G24750 60 / 3e-09 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011882 [exp] 765 / 0 AT3G07020 885 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10009556 [exp] 741 / 0 AT3G07020 707 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10024544 [exp] 737 / 0 AT3G07020 714 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10022815 [exp] 663 / 0 AT3G07020 742 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10020381 [exp] 593 / 0 AT3G07020 568 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10011883 [exp] 583 / 0 AT3G07020 648 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10018878 [exp] 563 / 0 AT1G43620 849 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Lus10028572 [exp] 561 / 0 AT1G43620 840 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Lus10009557 [exp] 303 / 3e-99 AT3G07020 261 / 6e-83 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G178300 [exp] 766 / 0 AT3G07020 817 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G238600 [exp] 763 / 0 AT3G07020 839 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G067100 [exp] 578 / 0 AT1G43620 800 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Potri.005G193100 [exp] 564 / 0 AT1G43620 805 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Potri.003G021100 [exp] 76 / 3e-14 AT5G24750 606 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase CL0113 [flax] [poplar] GT-B PF03033 [flax] [poplar] Glyco_transf_28 Glycosyltransferase family 28 N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10020382 pacid=23144170 polypeptide=Lus10020382 locus=Lus10020382.g ID=Lus10020382.BGIv1.0 annot-version=v1.0 ATGGCGCACAAGTCACCGGAGGATGATCGAGAAAGCATTCCGGTTCACCAATCCAGCTCGTCCAGTGAATCTGTTTCTGTTGATGTTGATAACTCGACCG ACAATGCCGCTTCCTCCATCTCCAATTCCTCCGGAGAAGCATCAAGTCCGGCTAAGACAGAGTCACATCTTAGTTTCCGTCAGAAAGCTAAAGCATTCAA GGATAGTCACAAGTTAGGCATGGTGGTGGCGAAACTTTTTGATGAAAAGATTCCTCTGAAGAAGAAGCTGAAATTGTTTAATCGAGTTGCTACTGTGAAA GACGATGGCACGGTTCAGTTTGATGTTCCTGTGGATATAAAACCACAAAGCCTTGATTTCGGGACTGGCGTTGTTTATCATGAAGCTGGTGATGGAGAAT CTGTTGACACAACTGCTTTGAAGGATATACCTCCATTGCAAATAGTAATGCTCATAGTTGGAACCCGTGGAGACGTGCAACCTTTTGTTGCAATTGGAAA GCGTTTGCAGGAAGATGGCCATAGGGTAAGACTTGCCACCCACGCCAATTTTAAAGACTTTGTATTGACTGCTGGTCTGGAGTTTTTCCCTTTGGGTGGA GATCCGAAGGTCCTTGCTGGTTATATGGTCAAGAATAAAGGTTTCTTCCCATCGGGGCCTTCAGAAATACCTGTTCAGAGGCAACAAATGAGAGAAATCA TATTCTCTTTACTTCCTGCGTGCCAGGATCCTGATCCTGAAACAAATATTCCGTTCAGAGCAGAAGCGATCATTGCCAATCCTCCAGCATATGGCCATAC ACATGTGGCGGAGGCGCTAAAGGTGCCTTTACATGTGATCTTCACGATGCCTTGGACGCCTACTACTGAATTCCCACATCCTATGTCTCGAGTTAAACAA CCAGTGGCAAATAGATTATCATATCAAATTGTTGATGCATTCATTTGGCTTGGAATTCGAGATTTAATCAACGAGTTCAGGAAGAAGCAGCTAAAGCTAA GGCGAGTCACATATTTAAGTGGACACTCTAGCTCACCTCCTGATCTGCCTTATGGGTATATATGGAGTCCTCACCTTCTCCCCAAACCAAAAGATTGGGG ACCGAAGATCGACGTCGTTGGCTTTTGCTTCCTTGACCTTGCGTCATGTTATGTGCCTCCGGATGATCTTGTACAGTGGCTAGAAGCTGGCGACCCACCT GTCTATGTTGGTTTTGGTAGCCTTCCTGTTCAAGAACCCGAGAAGATGACACAGATGATTGTAAAGGCTTTGGAACTTACTGGTCAAAGAGGCATCATCA ACAAAGGCTGGGGTGGGTTAGGAAATTTGGCAGAACCAAAGGACTCCATCTACTTGCTGGACAATTGCCCTCATGACTGGCTCTTCCTAAGATGCAAGGC TGTGGTGCACCACGGAGGCGCTGGAACAACTGCTGCTGGTCTTAAAGCTGCATGTCCAACCACCATAGTGCCTTTCTTCGGTGACCAACCGTTTTGGGGA GATCGAGTCCATGCTAGAGGAGTCGGCCCTGCACCGATACCAGTGGACGAGTTCTCGACTGAAAAACTGGTCGAAGCAATCAAATACATGCTGGACCCTG ACGTAAAACAGCGAGCGGTAGAAATCGGGAAGGCGATGGAGAATGAAGATGGGGTAGCAGGTGCGGTGAGAGCCTTCTACAAGCATTTCCCCGGGAAGAA GACGGAGGAGGAAGATGCATGCGAAGTAATCGGACATCATCATCATTCAAAACTTTCTATCCGCGGATGTTTCGGAATTCATTGA
AA sequence Show only first row Show all	>Lus10020382 pacid=23144170 polypeptide=Lus10020382 locus=Lus10020382.g ID=Lus10020382.BGIv1.0 annot-version=v1.0 MAHKSPEDDRESIPVHQSSSSSESVSVDVDNSTDNAASSISNSSGEASSPAKTESHLSFRQKAKAFKDSHKLGMVVAKLFDEKIPLKKKLKLFNRVATVK DDGTVQFDVPVDIKPQSLDFGTGVVYHEAGDGESVDTTALKDIPPLQIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLTAGLEFFPLGG DPKVLAGYMVKNKGFFPSGPSEIPVQRQQMREIIFSLLPACQDPDPETNIPFRAEAIIANPPAYGHTHVAEALKVPLHVIFTMPWTPTTEFPHPMSRVKQ PVANRLSYQIVDAFIWLGIRDLINEFRKKQLKLRRVTYLSGHSSSPPDLPYGYIWSPHLLPKPKDWGPKIDVVGFCFLDLASCYVPPDDLVQWLEAGDPP VYVGFGSLPVQEPEKMTQMIVKALELTGQRGIINKGWGGLGNLAEPKDSIYLLDNCPHDWLFLRCKAVVHHGGAGTTAAGLKAACPTTIVPFFGDQPFWG DRVHARGVGPAPIPVDEFSTEKLVEAIKYMLDPDVKQRAVEIGKAMENEDGVAGAVRAFYKHFPGKKTEEEDACEVIGHHHHSKLSIRGCFGIH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10020382 [exp]	0	1
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Lus10040956 [exp]	7.1	0.8751
AT4G32780			phosphoinositide binding (.1)		Lus10009508 [exp]	10.1	0.8589
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10023818 [exp]	10.5	0.8714
AT1G04030			unknown protein		Lus10008231 [exp]	22.6	0.8634
AT1G04030			unknown protein		Lus10003613 [exp]	25.4	0.8609
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10001714 [exp]	26.6	0.8580
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10011481 [exp]	26.8	0.8563
AT1G09000		MAPKKK1, ANP1	MAP KINASE KINASE KINASE 1, NP...		Lus10015185 [exp]	27.3	0.7984
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10021034 [exp]	28.3	0.8411
AT3G01710			TPX2 (targeting protein for Xk...		Lus10014571 [exp]	32.5	0.8605

Compare expression of checked genes

Lus10020382 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.