Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02810 358 / 4e-111 Protein kinase superfamily protein (.1) AT5G16500 359 / 3e-110 Protein kinase superfamily protein (.1) AT3G07070 346 / 2e-108 Protein kinase superfamily protein (.1) AT3G24790 341 / 3e-107 Protein kinase superfamily protein (.1) AT4G13190 338 / 1e-105 Protein kinase superfamily protein (.1) AT3G20530 326 / 2e-101 Protein kinase superfamily protein (.1) AT1G07870 323 / 1e-99 Protein kinase superfamily protein (.1.2) AT5G02800 320 / 3e-99 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT5G13160 315 / 3e-96 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT5G18610 314 / 3e-95 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003836 [exp] 473 / 6e-155 AT3G02810 472 / 4e-162 Protein kinase superfamily protein (.1) Lus10003533 [exp] 465 / 6e-152 AT5G16500 468 / 1e-159 Protein kinase superfamily protein (.1) Lus10009558 [exp] 441 / 2e-145 AT5G44800 91 / 6e-20 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10011866 [exp] 343 / 6e-107 AT3G07070 556 / 0.0 Protein kinase superfamily protein (.1) Lus10040050 [exp] 325 / 8e-101 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Lus10011148 [exp] 324 / 2e-100 AT3G20530 560 / 0.0 Protein kinase superfamily protein (.1) Lus10043050 [exp] 323 / 4e-100 AT3G20530 561 / 0.0 Protein kinase superfamily protein (.1) Lus10040350 [exp] 323 / 5e-100 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023473 [exp] 322 / 9e-100 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G051600 [exp] 358 / 3e-111 AT3G07070 474 / 4e-165 Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 338 / 6e-106 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.002G241600 [exp] 336 / 2e-104 AT3G07070 543 / 0.0 Protein kinase superfamily protein (.1) Potri.011G137000 [exp] 325 / 3e-101 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Potri.010G021500 [exp] 325 / 2e-99 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G215100 [exp] 320 / 2e-99 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G046500 [exp] 320 / 2e-99 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.011G000500 [exp] 320 / 3e-99 AT3G20530 481 / 2e-170 Protein kinase superfamily protein (.1) Potri.004G018500 [exp] 320 / 3e-99 AT3G20530 473 / 2e-167 Protein kinase superfamily protein (.1) Potri.006G133300 [exp] 318 / 2e-98 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10020383 pacid=23144040 polypeptide=Lus10020383 locus=Lus10020383.g ID=Lus10020383.BGIv1.0 annot-version=v1.0 ATGGCCGGCAGCAAGGTGTTACTAACATACAAGCGGAAGCTGTCATCATCTGTAACTGGTGCTGCCAATGGAGATGGCTGCTATAATTCTCTTGCTGGAG GAGGAACAAACAATGTTCATTTAACAAGAGCACTACAAACTGTTGGACAAGTTGATGAGCTTAAATTGGAAAATCAGCCAGGGATTTCATTATTGGTTCC TGGCTGTGCCATATGTGGTTTCAGAGGCAACCTTCTGAAATGCAATGACTGCCACCAATTGTATCATCAGCAGTGCCTTGACAGCATCCCCGAGCCAAAG CATTTCCAAAATGGAGAAAAGCTGAGCTGCAGGTGTGAGCAACAAGGTTCTTCAGGACATGAATCCTTCAATGGGCGTAGTGAATTTGCAAGTGGCGACA TTGATGAATCTGGTGTAAAGCCAATGATAGCTACTTCTGACGTATCATTGGTGACAGTAACTCCATATGAGAGTAGCCCAGGCGAGGAAGCTTTACCGTG CTTAGAGTCATTTGAGAAGAGCCCTTTCCTTAAGCCTGCATTTTCAGGTACTGACAAGATTAAGGAAGAAAATTTGCCCTCTCAGGTAGACCCTCTGCAG AGTATGGGCTCTGGCAGCTCTAAATCGTCAATGGGGAGAACTTGCAATGTTGAATATGATGCAAATTCGTCTATATTGGAAGCTTCAAATGCCGAAGGCA ACAATTCAATCTCTACCAATCTATCTTGTAGTTTACCCAGCCATTTCCCTGGGAAATCGAAGTCGAAAACTTTGATCACTTTTAGCCGGAGATGTAAAAA GAAAACCAAGATTACCGTGCTTGATGGCAAAGAACTAGATGAAGCACAAAATAGTGTCTCTCGGGACAAACTCAGCATATCCTCTTGTAGCGCAGCTCCT CCTACAGACTGTTATGCAGATCAATCAGCTAGGCAAAAGCTTCCAGAGGAAAATACAAACACGAAGTGTGTCTCATGTCAAAGTCAAGATGAGATAAAAG TTGTTTTAAAGAGTGATACTCGAGATCCATACGGTTCCATTGTCTTAGATGCTCAGCAATACGGCCATGAGTGTCAAGACAAACCTGAGGACAAACTTAG GAAAGAATTCATACCTGGTTCCGGAACGGATGACATGCAAGCCGATTCAAATTTCCCCAAGACACATAGCTCTTCTGGTACACTGGATTGCAATATGGAT GTAGACATCTGCAAGGAATCTGCTCATGGTGCTTCAAAAGCTCATCTTGATTCTCGGGAGTCCATGAGTAGAATCCATGCTACTGTTTGCCCTGAGGTTT CCAACTGTGACCCATTGGAAGGATCAAATGTGAGAGGTGTGCAGGAAGTCGTCCCGAACTCTAACGATGAAGCCAAAGACAAATGTCTACAGGTGAGCAT CGCTGCTTATAGTCTAGTTGTTGTGCCCCTTCTATTATGTCTGCATCGAGTTACTGATTCTTCCTTACCATGGTTCCAGCTATTTTCAGAACAAAGAAGC ATCGATCAGTGCCCAACAATAGGCGTTAAACCAGAAATAACAGGGCCTTTAGCTCCTGACGAAGTGAGGAAATCTTTTCCTGCAGAAATTACGGGACACA AGCAAATGACTTGCATCCCGAGCAGTTCTTCCTTGAACTTGGATCTATCCTTGAAGATGGAACCGAAAACAGGTAACTTTTCATGTCTGACACCCTGCTC CCAGTTACCTCCTTGGAACGAAGAAAGAAGACAATTTACTCGAGCTGAAGTGACTGAAAACCACAGAACTTCATTCCTTAGACAAAGGATGTTGCTGGAT AGGATTGCGAATAAAGCGAGCCGTTTGAACTCCAACGGTGCTTTTCAAGACAGAATAGATGCTAGTCTGTGGTCAGAACAGGAACTGGACTCGCTCTGGA TCGGCGTAAGAAGATACGGCAGGGACAATTGGCATACAATCTTAAGGGATCCAAGGCTCCACTTTCCTCCATGGAGAACTCCGAACCACCTGGCTGACAA GTGGGAAGAGGAACAAATCAAACTATTGGACGGCAAGCATCCTACTTCGTGTCCAGTAACTTGGAACGGTTTCCACACCGAATCTAACCTCCCTTCTTCA GCAGCTGCACAGTTCCATGGCCCTTATGGTGCCAAATTCAAGAGGCGTCCGAGAAACGCCAGAGATCAGGTTTACATGCCACAGGGTTATTACCAATACA GCTCTTTGCCAACTGCTGGCCATATGGCCTCAAGGGGTAACTTACCCCACTGGCTGAAAGAAGCGGTGACCACTCCTCCTCCGAGACCGACCGAGGTAAC TCCACCCCGAGTATTTGCATCCTTTGCTCATTGCGGGTTGACTCAAGTCGCCAGACCGTGTTCACACCCTTTTGAAACGGAAACCGGCCTGCGAAATAAA ATCCCTGGGGGTACCGGAATAAGAAACGAGAGCTCTGCCCGGAACTGTTGGTCTGCTGCAACCTGCCGATCCTTGTCTGAGGTGGTGGCAGTGAAGCAAA TCGACAAGCATTCCCAAGGTTGCAAGGATTTTGTGAAGGAAGTGAACAGCATCAGTACACTGAACCATGACAATATTGTCCAATTGGTTGGTTATTGTGC TGATGGAGATCAAAGGCTATTGGTCTTTGAGTATATCCCCAATGGCTCCCTCGAGAACCACCTCCTCGAGTTGAACCCCGGCGAGAAGTCAATGGACTGG ATAAGAAGAATAAAGATAGCCCACGGCACTGCCGAAGGCTTAGCCTACTTGCACCTCCAAGCGAATCCGCCCGTAATCTACCGGGACTTGAAGCCCTCCA ACATTTTGGTGGACGAGGATTTCAACCCGAAGCTCTCCGATTTCGCGTCGGTGAGCATTGGTGGGGACGTCACTCACGGTCCCGACCAGTCAAGGGCCAT GGGCACGTACGGCTACTCAGCGCCTGAGTACTCGAGTTCGGGCATGCTCACCTCGAAATCGGATGTCTACAGCTTTGGAGTCATTCTCCTCGAGCTCATC ACCGGTCGTAGAGCCATCGATACCACTCGGCCTAACGACGAGCAGAACCTTGTTCAATGGGCCCAGCCCATATTTCGAGACCCGAAAAGGTTCCCGGACA TGGCTGACCCGTTACTGAGGCGGCAGTTCCCGGAGAAGGATTTGAATCAAGCCGTTGCAATCGCGGCCATGTGCCTCCAGGAGGAGCCCGGAGCTCGTCC TTTGATGTCCGACGTCGTCATGACTCTTAGTTTCCTCTCAACGAACCCAGCCGACATCCCTCCGCCGTGCACCCCATCGCAGTCTAGCTCCGACGACGAC GGCAGCGACAGCGGAAGCGAAACCGACTACGACAACGACGACAATGGGAACAGATCTGACGACGATTACGAAGGAGTTGGGTATCTGTACGGCGATAGCT CGAATTACAGCGACGACGGCAGCTACGACGAAAGATCGGCGGGGGGCAGGGGAGGGGGGGGGCAACGGTGGCGGCGGGGGACGATCGAGCAAGAGACTTG GTGGCGGATCTTCTTCGAGGCGGAAAAGTAG
AA sequence Show only first row Show all	>Lus10020383 pacid=23144040 polypeptide=Lus10020383 locus=Lus10020383.g ID=Lus10020383.BGIv1.0 annot-version=v1.0 MAGSKVLLTYKRKLSSSVTGAANGDGCYNSLAGGGTNNVHLTRALQTVGQVDELKLENQPGISLLVPGCAICGFRGNLLKCNDCHQLYHQQCLDSIPEPK HFQNGEKLSCRCEQQGSSGHESFNGRSEFASGDIDESGVKPMIATSDVSLVTVTPYESSPGEEALPCLESFEKSPFLKPAFSGTDKIKEENLPSQVDPLQ SMGSGSSKSSMGRTCNVEYDANSSILEASNAEGNNSISTNLSCSLPSHFPGKSKSKTLITFSRRCKKKTKITVLDGKELDEAQNSVSRDKLSISSCSAAP PTDCYADQSARQKLPEENTNTKCVSCQSQDEIKVVLKSDTRDPYGSIVLDAQQYGHECQDKPEDKLRKEFIPGSGTDDMQADSNFPKTHSSSGTLDCNMD VDICKESAHGASKAHLDSRESMSRIHATVCPEVSNCDPLEGSNVRGVQEVVPNSNDEAKDKCLQVSIAAYSLVVVPLLLCLHRVTDSSLPWFQLFSEQRS IDQCPTIGVKPEITGPLAPDEVRKSFPAEITGHKQMTCIPSSSSLNLDLSLKMEPKTGNFSCLTPCSQLPPWNEERRQFTRAEVTENHRTSFLRQRMLLD RIANKASRLNSNGAFQDRIDASLWSEQELDSLWIGVRRYGRDNWHTILRDPRLHFPPWRTPNHLADKWEEEQIKLLDGKHPTSCPVTWNGFHTESNLPSS AAAQFHGPYGAKFKRRPRNARDQVYMPQGYYQYSSLPTAGHMASRGNLPHWLKEAVTTPPPRPTEVTPPRVFASFAHCGLTQVARPCSHPFETETGLRNK IPGGTGIRNESSARNCWSAATCRSLSEVVAVKQIDKHSQGCKDFVKEVNSISTLNHDNIVQLVGYCADGDQRLLVFEYIPNGSLENHLLELNPGEKSMDW IRRIKIAHGTAEGLAYLHLQANPPVIYRDLKPSNILVDEDFNPKLSDFASVSIGGDVTHGPDQSRAMGTYGYSAPEYSSSGMLTSKSDVYSFGVILLELI TGRRAIDTTRPNDEQNLVQWAQPIFRDPKRFPDMADPLLRRQFPEKDLNQAVAIAAMCLQEEPGARPLMSDVVMTLSFLSTNPADIPPPCTPSQSSSDDD GSDSGSETDYDNDDNGNRSDDDYEGVGYLYGDSSNYSDDGSYDERSAGGRGGGGQRWRRGTIEQETWWRIFFEAEK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16500			Protein kinase superfamily pro...		Lus10020383 [exp]	0	1
AT3G18670			Ankyrin repeat family protein ...		Lus10014701 [exp]	1.7	0.9026
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10013694 [exp]	4.0	0.8960
AT2G23700			Protein of unknown function, D...		Lus10040507 [exp]	4.9	0.8712
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10003488 [exp]	6.3	0.8653
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Lus10000643 [exp]	6.5	0.8342
AT2G37390		NAKR2	SODIUM POTASSIUM ROOT DEFECTIV...		Lus10024435 [exp]	7.1	0.8747
					Lus10016057 [exp]	8.7	0.8790
AT2G37390		NAKR2	SODIUM POTASSIUM ROOT DEFECTIV...		Lus10025294 [exp]	11.5	0.8335
					Lus10036680 [exp]	11.6	0.7855
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10029169 [exp]	13.7	0.8694

Compare expression of checked genes

Lus10020383 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.