Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13690 87 / 8e-18 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G55200 78 / 5e-15 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G56790 71 / 1e-12 Protein kinase superfamily protein (.1) AT1G70450 57 / 2e-08 Protein kinase superfamily protein (.1) AT1G23540 55 / 8e-08 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G68690 55 / 9e-08 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT1G70460 53 / 3e-07 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT5G35960 52 / 4e-07 Protein kinase family protein (.1) AT1G26150 52 / 9e-07 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1) AT5G45780 51 / 1e-06 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009559 [exp] 852 / 0 AT3G13690 418 / 2e-134 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10030950 [exp] 302 / 1e-93 AT3G13690 422 / 2e-137 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040097 [exp] 228 / 3e-66 AT1G55200 444 / 5e-145 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10006148 [exp] 89 / 2e-18 AT3G13690 1084 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10001996 [exp] 88 / 4e-18 AT3G13690 649 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008566 [exp] 79 / 3e-15 AT1G55200 657 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10011657 [exp] 55 / 1e-07 AT4G31940 479 / 3e-160 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10017898 [exp] 53 / 6e-07 AT1G68690 631 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Lus10035071 [exp] 53 / 6e-07 AT1G68690 570 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G200000 [exp] 77 / 9e-15 AT3G13690 1051 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.003G034900 [exp] 77 / 1e-14 AT3G13690 1045 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G130300 [exp] 71 / 1e-12 AT1G55200 535 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G150100 [exp] 67 / 2e-11 AT3G13690 773 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.014G038300 [exp] 64 / 1e-10 AT3G13690 537 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G035900 [exp] 54 / 1e-07 AT5G56790 311 / 1e-96 Protein kinase superfamily protein (.1) Potri.008G189700 [exp] 50 / 3e-06 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Potri.006G118500 [exp] 49 / 6e-06 AT5G02070 577 / 0.0 Protein kinase family protein (.1) Potri.005G185500 [exp] 49 / 8e-06 AT5G56790 348 / 1e-111 Protein kinase superfamily protein (.1) Potri.014G136400 [exp] 49 / 9e-06 AT2G48010 794 / 0.0 receptor-like kinase in in flowers 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020384 pacid=23144142 polypeptide=Lus10020384 locus=Lus10020384.g ID=Lus10020384.BGIv1.0 annot-version=v1.0 ATGAAAACTGGAGGAGAAGTGATAGTGGTAGCAGTCGATGCCGGGAAAGAGATTGTCGATGAAGCGATCATTTGGGCTCTGCGAAACGTCGCCCGGAACT TGGATACCCTCGTTCTTCTCCCGCTCATCCCTTCCCGTGGTGGCGAAGTTGCCGCTGCCGGCATCCCACCGGCCGTCAACCGAGCACAGCAGCAGTCTAT TCATGGAATTGTGAAGAAATGGGTAGCGAAGAAACTTAACAGAGAAGAGAGTACTCGGGGCTTGCCGCCGGGTTTCGTACCGCAGCCGGAAGAAGCTCGA AGGATTAAGAAGATTTGCGCCGATATGATCCGCGTCCTAAGTCGGATTCACAAAAGACATCTCCAAACCCAAGTGAAAGTCATAGCCGATGCACAGCTCG GCTCAGTGGCTTCAGCCGCAAGGGACCTCGAAGCAACATGGGTGATTCTCGACCGGCAACTGAAGAAAGAAGGGGAAATCTGCATGAAACAGCTGAAATG CAACATAGTAGTAATGGAGCAATCGGCCCCAAAGGTTATGAGGACGGCGGTGAATCCTAATCGAATAAGGAGAAGGCACAGCGTGAGCAGCAGAGACGGG ATCGACCTCACCAACAGCACGCTGTGGGGGTTAATAAATCATACCAGCAGTAATACATCGACCGCCACAGAAATAGACAGTGATGATGCATCATCTTTTA AAATCGAGTCAGATGAAGAATCGTTTCGGAAGAAGGTGTCCGAGACGCCTCCTGGCACGTTGTTCCATCTGGACTCGGTACTCGTGGAAAGGGAAATTGT GGAGGAAGGGTTTAGTAGCGCTCCGCATAAGGAGAAGATACCGGAGTTGAACAGTTGTTCAGATGACGACGATGATGGTGGTGGTGACGGTCGTGATGTT TTGATTTCCGGTCCGCATCCCGGTTCGAGTACTAGTGGTTTGAGTAAGAGCTATAGCGGACCTCCGAAGTTCGAGAAAGTTTGGGAGAAGGTTGACCCTA GCAGTTCGGGTCAAAGAGCTACGATTCTACCCAGGAGGTCACTGGATGGGTGTCCACCTAGGAGGTCACTGGACGGACACAACTTATCAAGGTTTCGAAA TAGTTTTAACCCACCGGGTCGAGTTCTAAGCCGGGGAAACTCGTTGCTCTCTAGCAAAACCACCAACCTATTCGAAGAAGAAACCGAACAACAACATTGC GAAATCCGGTTAGACGGTCCTTCGAACCTTGAAGAGAGAACTTCAAGCATCCGAAGGGCGATGACCCTTTCAATCAAGCCGCCGCCAATTCCACCACCAT TGTGCTCAATTTGCAAGGACAAAGCTCCTATTTTCGGAAAGCCCCCCAAGAAGTTCACCTACGAAGAGATCAAATCCGTCACGAATGGATTCGCCCGCGA GTCCATCCTGGCAGAGGACGGGCGAGGCTTGGTGTACAAAGGGAAACTTCCGAACGGACAAGTCGTGGCGGGGAAGCATAAAGCAGTGTAA
AA sequence Show only first row Show all	>Lus10020384 pacid=23144142 polypeptide=Lus10020384 locus=Lus10020384.g ID=Lus10020384.BGIv1.0 annot-version=v1.0 MKTGGEVIVVAVDAGKEIVDEAIIWALRNVARNLDTLVLLPLIPSRGGEVAAAGIPPAVNRAQQQSIHGIVKKWVAKKLNREESTRGLPPGFVPQPEEAR RIKKICADMIRVLSRIHKRHLQTQVKVIADAQLGSVASAARDLEATWVILDRQLKKEGEICMKQLKCNIVVMEQSAPKVMRTAVNPNRIRRRHSVSSRDG IDLTNSTLWGLINHTSSNTSTATEIDSDDASSFKIESDEESFRKKVSETPPGTLFHLDSVLVEREIVEEGFSSAPHKEKIPELNSCSDDDDDGGGDGRDV LISGPHPGSSTSGLSKSYSGPPKFEKVWEKVDPSSSGQRATILPRRSLDGCPPRRSLDGHNLSRFRNSFNPPGRVLSRGNSLLSSKTTNLFEEETEQQHC EIRLDGPSNLEERTSSIRRAMTLSIKPPPIPPPLCSICKDKAPIFGKPPKKFTYEEIKSVTNGFARESILAEDGRGLVYKGKLPNGQVVAGKHKAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13690			Protein kinase protein with ad...		Lus10020384 [exp]	0	1
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	6.1	1.0000
AT5G12180		CPK17	calcium-dependent protein kina...		Lus10000889 [exp]	7.7	1.0000
					Lus10016593 [exp]	8.8	1.0000
AT2G36780			UDP-Glycosyltransferase superf...		Lus10022628 [exp]	9.5	1.0000
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10000843 [exp]	9.8	1.0000
					Lus10022894 [exp]	9.9	1.0000
AT2G36380		ABCG34, PDR6, A...	ATP-binding cassette G34, plei...		Lus10008984 [exp]	14.5	1.0000
AT5G13620			unknown protein		Lus10017168 [exp]	14.6	1.0000
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Lus10015566 [exp]	16.2	1.0000
					Lus10040552 [exp]	18.5	1.0000

Compare expression of checked genes

Lus10020384 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.