Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61540 431 / 2e-148 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) AT5G56790 246 / 6e-73 Protein kinase superfamily protein (.1) AT3G13690 241 / 2e-70 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G55200 239 / 2e-70 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G18470 162 / 2e-42 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) AT1G10620 162 / 2e-42 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT1G07650 161 / 1e-41 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G70460 159 / 2e-41 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G23540 157 / 1e-40 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT5G38560 156 / 2e-40 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009559 [exp] 545 / 0 AT3G13690 418 / 2e-134 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10009560 [exp] 533 / 0 AT5G61540 518 / 0.0 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Lus10040097 [exp] 363 / 4e-116 AT1G55200 444 / 5e-145 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10030950 [exp] 357 / 2e-113 AT3G13690 422 / 2e-137 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10006148 [exp] 244 / 1e-71 AT3G13690 1084 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10001996 [exp] 245 / 2e-71 AT3G13690 649 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008566 [exp] 205 / 1e-57 AT1G55200 657 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10029151 [exp] 172 / 2e-47 AT1G23540 575 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10013014 [exp] 171 / 3e-47 AT1G23540 572 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G191900 [exp] 447 / 5e-154 AT5G61540 497 / 2e-177 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Potri.003G034900 [exp] 244 / 1e-71 AT3G13690 1045 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G200000 [exp] 241 / 1e-70 AT3G13690 1051 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G150100 [exp] 225 / 5e-65 AT3G13690 773 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G185500 [exp] 193 / 6e-54 AT5G56790 348 / 1e-111 Protein kinase superfamily protein (.1) Potri.014G038300 [exp] 189 / 1e-51 AT3G13690 537 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G130300 [exp] 184 / 4e-50 AT1G55200 535 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.003G053301 [exp] 168 / 4e-45 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) Potri.004G153600 [exp] 165 / 1e-43 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.009G115200 [exp] 164 / 3e-43 AT4G34440 575 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF01112 [flax] [poplar] Asparaginase_2 Asparaginase CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10020385 pacid=23144183 polypeptide=Lus10020385 locus=Lus10020385.g ID=Lus10020385.BGIv1.0 annot-version=v1.0 ATGGCGTGGGAGCATAGAATGAAGGTCGCGATCGGATCCGCTAGAGCGTTGAGATACCTTCACGAGGATTGTAGAGTCGGTTGCATCATTCATCGAGACT TCCGGCCGAGGAATATCCTCCTTACTCATGATTTCGAGCCCATGGTAGGCGATTTCGGCCTGGCGAGATGGCAATCGGACGGCCAGAAAGCAGAGGAAAC TCGAGTAATCGGCGCAATCGGGTATTTAGCTCCAGAGTACACTCGAGCTGGGATAATAACAGAGAAAGCTGATGTCTATGCATTTGGGATAGTCCTCTTG GAGCTTCTATGTGGTGTCAAAGCCACTGAGTTCTCAAGAACCATGGACCAAAACTTCCTCCTAGAATTGGGGCGGTGGTTGGTGGAGAGGGATGTGGTGA ATGAGATACTTGATCCAAGGTTGCAAGATAGCTATGTGGAGAATGAGGTGATGTGCATGGTGTATGCTTCTAGCTTGTGCCTATCACCGAACCCCGAAAA TAGACCGAAGATGTCGAAGGTACTGAAGATCCTAGAAGGGGACATACCACAAGAGTTAGTCAACAAAAACGTACAGCCAAGATTCGTCTTCCCAAACCAG TTAGTCAACGTGATCTACGGCCCAGATTTGCCTGCTTTCGAACGAGGAACTCCGGTGATAAAGGCCAACAAGCAGGAAGCAGCACATTGGTGGAGGAACT CGAGCAACGTTGCTGACATCATCGCCAACCCCCCTCCAACAAAATCAGGCGGCGGAGGAGGGGCGAAGGGTGGTGGTCCTGGCGATGGTCGGATTGATTT CAGCGGAGAGTATAGGGAGTACTTGGAAGGGTCATTGACTAAGTTCTTTGACGGAATGGAAAGGCGACTTTTGCTCAGCTTCCTTCTTCCTATTTGGAAA CCAACAGTAGGACCTGGTGGAAGTCCTGATGAGAATGGAGAAACCACCATTGATGCCATGATCATGAATGGGGTAACAATGGAGGTCGGGGCAGTCGGAG CCATGAGGTATGTGAAAGATGGAATAAGAGCAGCTAAACTGGTAATGGATTACTCGAAGCACACTTTCCTCGTTGGCGAAAAGGCATCCGTTTTTGCCAT TTCGATGGGTCTCCAAGGGCCGACCAACCTTAGTTCGGTAGAGTCGATAGAGAAGTGGAGTGCTTGGAAGGACAATGACTGTCAACCCAATTTCAGGCAG AATGTCTTGCCTGCAAGCGGTTGTGGTCCTTATCATCATAATATAGATAAAGAAGAAGAACAGGTGCTGCACTGTTCCGGTCGACCCAGCTCGACCGAGC CGAGGTCTTGTCTTGTCGGCCGGCACAACCATGACACCATATCGATGGCTGTCATTGATAGAATGGGGCACATTGCTGCTGGTACATCAACTAATGGAGC TAGTTTTAAGATCCCTGGCAGGGTTGGCGATGGACCCATAGCAGGATCTGCAGCTTACACGGATAGTGAAGTGGGAGCTTGTGGTGCAACTGGCGACGGT GACATTATGATGCGCTTCCTTCCATGCTACCAAGTTGTGGAGAGTATGAGACGAGGAATGGAACCTAAGCTAGCTGCGGAGGACGCAATCTCTCGCATTG CAAAGAAGTTCCCTGATTTCGTTGGAGCTTTGTTTGCTGTCAATAAGAATGGAGTCCATGCTGGAGCTTGCCATGGATGGACATTCCAGTATTCTGTCAG AGACTCCCAGATGAACGACGTTCAAGTTTTCACAGTGTTGCCGGCCGGTTGA
AA sequence Show only first row Show all	>Lus10020385 pacid=23144183 polypeptide=Lus10020385 locus=Lus10020385.g ID=Lus10020385.BGIv1.0 annot-version=v1.0 MAWEHRMKVAIGSARALRYLHEDCRVGCIIHRDFRPRNILLTHDFEPMVGDFGLARWQSDGQKAEETRVIGAIGYLAPEYTRAGIITEKADVYAFGIVLL ELLCGVKATEFSRTMDQNFLLELGRWLVERDVVNEILDPRLQDSYVENEVMCMVYASSLCLSPNPENRPKMSKVLKILEGDIPQELVNKNVQPRFVFPNQ LVNVIYGPDLPAFERGTPVIKANKQEAAHWWRNSSNVADIIANPPPTKSGGGGGAKGGGPGDGRIDFSGEYREYLEGSLTKFFDGMERRLLLSFLLPIWK PTVGPGGSPDENGETTIDAMIMNGVTMEVGAVGAMRYVKDGIRAAKLVMDYSKHTFLVGEKASVFAISMGLQGPTNLSSVESIEKWSAWKDNDCQPNFRQ NVLPASGCGPYHHNIDKEEEQVLHCSGRPSSTEPRSCLVGRHNHDTISMAVIDRMGHIAAGTSTNGASFKIPGRVGDGPIAGSAAYTDSEVGACGATGDG DIMMRFLPCYQVVESMRRGMEPKLAAEDAISRIAKKFPDFVGALFAVNKNGVHAGACHGWTFQYSVRDSQMNDVQVFTVLPAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61540			N-terminal nucleophile aminohy...		Lus10020385 [exp]	0	1
AT5G05310			TLC ATP/ADP transporter (.1.2....		Lus10012891 [exp]	25.3	0.8158
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Lus10039723 [exp]	27.2	0.8117
AT4G07390			Mannose-P-dolichol utilization...		Lus10017025 [exp]	38.3	0.8209
AT3G15920			Phox (PX) domain-containing pr...		Lus10023125 [exp]	58.7	0.8109
AT3G58190	AS2	LBD29, ASL16	ASYMMETRIC LEAVES 2-LIKE 16, l...		Lus10000613 [exp]	59.1	0.8100
AT2G25870			haloacid dehalogenase-like hyd...		Lus10005169 [exp]	62.2	0.7947
AT5G37480			unknown protein		Lus10001333 [exp]	70.2	0.8107
AT3G02065			P-loop containing nucleoside t...		Lus10008509 [exp]	71.2	0.7745
AT3G54480		SKP5, SKIP5	SKP1/ASK-interacting protein 5...		Lus10039556 [exp]	74.9	0.7987
AT5G17290		ATG5, APG5, ATA...	AUTOPHAGY 5, autophagy protein...		Lus10020737 [exp]	102.3	0.7917

Compare expression of checked genes

Lus10020385 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.