Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12910 628 / 0 SCPL20 serine carboxypeptidase-like 20 (.1) AT3G25420 605 / 0 SCPL21 serine carboxypeptidase-like 21 (.1) AT2G22920 319 / 5e-100 SCPL12 serine carboxypeptidase-like 12 (.1.2.3) AT5G09640 318 / 5e-99 SNG2, SCPL19 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1) AT1G73300 317 / 6e-99 SCPL2 serine carboxypeptidase-like 2 (.1) AT1G73290 313 / 1e-97 SCPL5 serine carboxypeptidase-like 5 (.1) AT1G73270 311 / 1e-96 SCPL6 serine carboxypeptidase-like 6 (.1) AT2G23000 308 / 6e-96 SCPL10 serine carboxypeptidase-like 10 (.1) AT2G22990 308 / 6e-96 SCPL8, SNG1 SERINE CARBOXYPEPTIDASE-LIKE 8, sinapoylglucose 1 (.1.2.3.4.5.6) AT2G22980 307 / 1e-95 SCPL13 serine carboxypeptidase-like 13 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009562 [exp] 897 / 0 AT4G12910 617 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10025859 [exp] 772 / 0 AT4G12910 694 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10038240 [exp] 762 / 0 AT4G12910 689 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020206 [exp] 569 / 0 AT4G12910 603 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10026830 [exp] 553 / 0 AT4G12910 595 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10026831 [exp] 550 / 0 AT4G12910 596 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020207 [exp] 550 / 0 AT4G12910 553 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10018667 [exp] 365 / 2e-107 AT1G73280 478 / 2e-153 serine carboxypeptidase-like 3 (.1) Lus10007731 [exp] 325 / 1e-101 AT5G09640 504 / 4e-177 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G177500 [exp] 710 / 0 AT4G12910 743 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.019G054300 [exp] 593 / 0 AT4G12910 636 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.001G291300 [exp] 325 / 8e-102 AT1G33540 434 / 9e-150 serine carboxypeptidase-like 18 (.1) Potri.013G124900 [exp] 324 / 2e-101 AT1G73280 513 / 0.0 serine carboxypeptidase-like 3 (.1) Potri.001G291800 [exp] 322 / 2e-100 AT1G73300 432 / 1e-148 serine carboxypeptidase-like 2 (.1) Potri.001G290900 [exp] 320 / 2e-99 AT1G33540 430 / 8e-148 serine carboxypeptidase-like 18 (.1) Potri.001G290800 [exp] 308 / 5e-96 AT1G33540 404 / 6e-139 serine carboxypeptidase-like 18 (.1) Potri.001G291700 [exp] 309 / 2e-95 AT1G33540 414 / 8e-142 serine carboxypeptidase-like 18 (.1) Potri.005G091700 [exp] 278 / 6e-84 AT5G23210 652 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.001G312800 [exp] 272 / 9e-82 AT1G33540 402 / 3e-137 serine carboxypeptidase-like 18 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10020387 pacid=23144190 polypeptide=Lus10020387 locus=Lus10020387.g ID=Lus10020387.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCTCTCTCTTCTTATAAGCTACTGCTGTTCGTCTGGCTGAGCTTTGTAGCTCCGCTAGCTCACTCTGCTCCTAAGAATGCTATCGTCACGC ACCTCCCTGGATTCTCCGGCTCTTTCCCGTCCAAGCACTATTCTGGGTATGTGACGATAAATGAAGAAACGGGGAAGAGATTGTACTACTATCTAGTCCA ATCGGAGCGGAATCCGGCCAAGGATCCTCTTGTTCTTTGGCTGAATGGTGGTCCTGGTTGCTCTAGCTTCGATGGATTCGTGTATGAACATGGTCCTTTC AACTTTGAGAAGATAAAGCAAGGTCAGCCCAGATTGCATCTGAACCCATATAGCTGGTCCAAGGTTTCGAATGTGTTGTATGTAGACTCTCCAGCTGGGG TTGGGTTGTCTTATGCTAAGAATACATCAGAGTACAATACAGGGGATCTAAAGACTGCCTTAGATTCCCACACCTTCCTCTTGAAGTGGTTCGAGCTGTA CCCGGAGTTCATCTCGAACCCGTTTTTCATCTCTGGGGAATCATATGCTGGGATATATGTCCCAACTCTTGCCTATGAAGTTGCGAAAGGAATTGATGCT GGTGTTAAGCCTCTCATCAATCTGAAGGGCTATATGGTTGGGAATGGAGTTACTGATGATGTATTTGACGGAAATGCGCTTGTTCCATTTGCACACGGGA TGGGACTCATCTCAGATGACCTCTATCTGGAGGTTAACCGAGCTTGCAACGGAAGTTTCTATAATCCAATCGAGCAGCAGTGTGAGAACAAAATGCGAGA AGTTGACAGGGGACTACGTGGTCTGAACATATACGACATCCTAGAACCGTGCTATCATTCTGATGTCGTTGGTAAAGATGACAAAATCAGAATGCCATCT AGCTTCTTGGAATTGGGTGCAACATCAGATCGGCCTCTTCCCGTTAGGACGAGGATGTTTGGTCGCGCCTGGCCATTCCGAGCTAATGTTAGGGCTGGAA TTGTTCCGACTTGGCCACAAATCCTTAACAGTGCTGACCTCAACAATGAAGACGTCCCATGCACTGATGATGAAGTTGCTACAGTATGGCTTAATCATGA AGCAGTAAGAGAAGCGATCCATGCTGAACCAAAAAACGTATCGGGGAATTGGGAGCTGTGTACGAACAGGATCGTCTTCGATCATGATGCCGGTAGCATG ATCAACTACCATAGGAACCTGACTTTGCGAGGATATCGCGCCCTCATTTACAGTGGGGATCATGACATGTGTGTACCGTACACTGGAAGTGAAGCATGGA CGAGATCAATGGGATACAATATCGTCGACAAATGGAGACCTTGGGTCTCAAATGGACAAGTTGCTGGGTATGTGACGATAAATGAAGAAACGGGGAAGAG GTTGTTTTACTATTTGGTCCAGTCGGAGCGGAATCCGGCGGAGGATCCTCTTGTTCTTTGGCTGAATGGTGGTCCTGGCGGCTCTAGCTTCGATGGATTC GTGTATGAACATGGTCCTTTTAACTTTGAGAAGATAAAGCAAGGTCAACCCATATTGCATCTGAACCCATATAGCTGGTCCAAGGTTTCAAACGTGCTCT ATTTAGACTCTCCATCTGGAGTTGGATTCTCTTATGCGAGGAATACATCAGAATACAAGACTGGGGATCTAAAGACTGCCTTAGATTCCCACAACTTCCT CTTGAAGTGGTTCGAGCTGTACCCGGAGTTTATCTCAAACCCGTTTTTCATCGCTGGGGAATCATATGCTGGGATATATGTCCCAACTCTTGCCTATGAA GTTGCAAAAGGAATTGATGCTGGTGTTAAGCCTCTCATCAATCTGAAGGGCTATATGGTTGGGAATGGAGTTACTGATGATGTATTTGACGGAAATGCAC TTGTTCCATTTGCACACGGGATGGGACTCATCTCAGATGACCTTTATCTGGAGGTGAACCGAGCGTGCAACGGAAGCTTCTATAATCCAATCGAGCAGCA GTGTGAGAACAAAATGCGAGAAGTTGACAGGGGACTACGTGGTCTGAACATATACGACATCCTAGAGCCGTGCTATCATTCTGATGTCGTTGCTAAAGAT GGCAAAATCAGACTGCCGTCTAGCTTCTTGGAATTGGGTGCGACATCAGATAGGCCTCTTCCCATTAGGACGAGGATGTTTGGTCACGCCTGGCCATTCC GAGCTAATGTCAGGGCCGGAATTGTTCCAACTTGGCCACAAATCCTCAACAGTGCTGACATCAACAATGAAGTCGTCCCATGCCTTGATGATGAAGTTGC TACAGTATGGCTTAATAATGAAGCAGTTAGAGAAGCGATCCATGCCGAACCAAAAAACGTATCGGGCGATTGGGAGCTGTATACGACCAGGATTGTCTTC GATCATGATGCTGGTAGCATGATCGATTACCATAGGAACCTGACTTTGCGAGGATATCGTGCCCTCATTTACAGTGGGGATCATGACATGTGTGTACCGT ACACCGGAAGTGAAGCATGGACGAGATCAATGGGATATAATATCATCGACAAATGGAGACCTTGGGTCTCAAATAGACAAGTTGCTGGGTACACTCAAGG GTATGCAAACAATCTAACTTTCTTGACCGTCAAGGGCTCCGGGCACACGGTTCCTGAGTACAAACCAAGGGAAGCACTAGACTTATACAGCAGGTTTCTT GCAGGACAAGCAATGTGA
AA sequence Show only first row Show all	>Lus10020387 pacid=23144190 polypeptide=Lus10020387 locus=Lus10020387.g ID=Lus10020387.BGIv1.0 annot-version=v1.0 MAAALSSYKLLLFVWLSFVAPLAHSAPKNAIVTHLPGFSGSFPSKHYSGYVTINEETGKRLYYYLVQSERNPAKDPLVLWLNGGPGCSSFDGFVYEHGPF NFEKIKQGQPRLHLNPYSWSKVSNVLYVDSPAGVGLSYAKNTSEYNTGDLKTALDSHTFLLKWFELYPEFISNPFFISGESYAGIYVPTLAYEVAKGIDA GVKPLINLKGYMVGNGVTDDVFDGNALVPFAHGMGLISDDLYLEVNRACNGSFYNPIEQQCENKMREVDRGLRGLNIYDILEPCYHSDVVGKDDKIRMPS SFLELGATSDRPLPVRTRMFGRAWPFRANVRAGIVPTWPQILNSADLNNEDVPCTDDEVATVWLNHEAVREAIHAEPKNVSGNWELCTNRIVFDHDAGSM INYHRNLTLRGYRALIYSGDHDMCVPYTGSEAWTRSMGYNIVDKWRPWVSNGQVAGYVTINEETGKRLFYYLVQSERNPAEDPLVLWLNGGPGGSSFDGF VYEHGPFNFEKIKQGQPILHLNPYSWSKVSNVLYLDSPSGVGFSYARNTSEYKTGDLKTALDSHNFLLKWFELYPEFISNPFFIAGESYAGIYVPTLAYE VAKGIDAGVKPLINLKGYMVGNGVTDDVFDGNALVPFAHGMGLISDDLYLEVNRACNGSFYNPIEQQCENKMREVDRGLRGLNIYDILEPCYHSDVVAKD GKIRLPSSFLELGATSDRPLPIRTRMFGHAWPFRANVRAGIVPTWPQILNSADINNEVVPCLDDEVATVWLNNEAVREAIHAEPKNVSGDWELYTTRIVF DHDAGSMIDYHRNLTLRGYRALIYSGDHDMCVPYTGSEAWTRSMGYNIIDKWRPWVSNRQVAGYTQGYANNLTFLTVKGSGHTVPEYKPREALDLYSRFL AGQAM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10020387 [exp]	0	1
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10012007 [exp]	4.9	0.7443
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10018223 [exp]	9.5	0.7801
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10026123 [exp]	9.6	0.7545
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10029283 [exp]	32.9	0.6723
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Lus10003311 [exp]	58.3	0.6955
AT2G06510		ATRPA70A, ATRPA...	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10033435 [exp]	61.8	0.6582
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Lus10004987 [exp]	76.5	0.6720
AT2G45150		CDS4	cytidinediphosphate diacylglyc...		Lus10009281 [exp]	88.0	0.6544
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10027208 [exp]	108.8	0.6536
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10018505 [exp]	123.6	0.6318

Compare expression of checked genes

Lus10020387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.