Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25430 545 / 0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G55870 182 / 2e-49 ATPARN, AHG2 ARABIDOPSIS THALIANA POLY\(A\) RIBONUCLEASE, ABA-HYPERSENSITIVE GERMINATION 2, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009563 [exp] 1122 / 0 AT3G25430 578 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10033691 [exp] 196 / 3e-54 AT1G55870 713 / 0.0 ARABIDOPSIS THALIANA POLY\(A\) RIBONUCLEASE, ABA-HYPERSENSITIVE GERMINATION 2, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) Lus10002539 [exp] 177 / 1e-52 AT3G25430 87 / 9e-21 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10031646 [exp] 157 / 9e-41 AT1G55870 637 / 0.0 ARABIDOPSIS THALIANA POLY\(A\) RIBONUCLEASE, ABA-HYPERSENSITIVE GERMINATION 2, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G177400 [exp] 679 / 0 AT3G25430 667 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.014G018500 [exp] 671 / 0 AT3G25430 662 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.001G368401 [exp] 207 / 3e-58 AT1G55870 685 / 0.0 ARABIDOPSIS THALIANA POLY\(A\) RIBONUCLEASE, ABA-HYPERSENSITIVE GERMINATION 2, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF04857 [flax] [poplar] CAF1 CAF1 family ribonuclease
Representative CDS sequence Show only first row Show all	>Lus10020388 pacid=23144085 polypeptide=Lus10020388 locus=Lus10020388.g ID=Lus10020388.BGIv1.0 annot-version=v1.0 ATGGCGGTTGCTCTGCGGCGGCGCTTTTTCTGCACCCAGGCCGTCGGAAATGCGTCCGGAAGACACCGTCCATGGAGCGTAAAGCAAGTGAGGAAGTCTA ACTTCACCGATTCCCTCGTCGACGAAATCAAATCACAAGTCTCCACCTCGGACTTCGTCGCCGTCTCTGTACAGAAGACCGGCTCCTTCTCGTCTCCATG GCACCGTCCTTCTCCGTTCGACACTCCTGACATCGCTTACTTGAAGGCGAAGTTCGCCGCCGACCGATTCCAAGTCTTCCAGCTCGCGATTTGCCCCTTC CGGATTCGAGCTCCCACCATCACTGCGTATCCATATAACTTTCACTTGTTCCCGAGGGATGAAACGAAAGTTGGAATCCCTCCGTCGTACAGTTTCTCTT GTCAGTCGTCGAGTTTGCTTGCTATGGCTCGAGATGGATTCGATTTCAATGCTTGCGTTAATGATGGGATATCGTACTTGTCTAGAGAGCAAGAATCTAT GGTGAAAGCTCGGGCGGATAGTCCCAGACCAGCCAAAGTCGATGAACTGGGAGAATCTGCTTCTCCTCTTTCTGTTGTAGATTCGATTTTCATCGAAAAG ATGAAAACACGAGTGAAGAATTGGAAAAATGCAGTTCAAGACTCTAGTAGCAATGCAAAGGCAGATACTCTGATGAAAGCCTTAAGAAGGCTCATTGTGG AGACCGAGAAGTTTGAATCAAGACCATGCATGAGCATTGATGTTTGCAGTGACCGACAGGCACATCTTGTAGCTAAGATGTTGCAAAATTACGACGATAA CCTTGTTCCGTTGATGATCCCAGCAAAGTCAGGAGGAAGCCAGGCAGTTCGTGTTGTCTTGACAAGTTCAAAAGAAGACCGGGATCTTCTTCTTGAAACG CTTCGGAACATTGATGAAGAAGCAAACAAGAAAAACCGTGGCTTCCGAGAGGTGATTGATTTGATTTCTTCTTCACAGAAGCCTATAGTCTCCCACAATT CCCTTAATGATTTAACATTCATCCATTCCAAGTTTCTTGCACCCTTGCCTCCTTCTATGGAGGAGTTCATGGTCTCCTTACACAAGGTCTTGCCCACCGT CATTGATGTCAACCATCTTGTCAAGGAAACCGGTCTCCGTAAAAACGTGGCTAGCATACCTTACATCATCTCGTACTTGAAACATCAATTTCCTGCACCA GTTGATGTGGAAATTCCATTCCAAGTTAACGAAGGGGAAATTCATGGGCATAGCGTTGTGAGCATATCCGAACTGTTTGCAAAGTTATGCTGCATACTCA AACTCACACCCGACTCAGAGGAACAGCATGTCAAGAATCACGGTACTTCTCTTCATGCTTTTGCGAATAATTTCCACCCGCAACTACAAGAACCAACCGA CGGAGAAATCGGAGTATGGAGTAGCAGCAACACAAAGCAAGTGAGATGCGACGATCTAGTCTTCTTGTGGGGATTCAGGAGCGGTACGACTGCAGGAAAG CTGAAGACTTTGCTGGAGGATTCTCACGCTGTTTTCTCTGAAGGTTTTCACGTCCGATTTGTGGACAAGAGCTGCGCGATCGTTGTTTTCTCGAGTCCTA ATTCGTCTAAAACCTTTCTGAACGCAATGTCCAATCTCCCAGACACATCATCCAGCTCTTTACGGGAGCTTGCATCCGAAGGCATAACAGCAACTGGGTA CGAGACTTACGACAGAGCTTGCAAGTCTGGGTTATGGGAGGCTAATTTAGCAGATTCGCTAGACAAAGTCATCGCAGCAGACTGCCGTTTGGAGAGTGAT CAGAGAATCGAATCAGCGGATAGTCGCCAGAAGAGCGAGTTGATAATCGATTTCGACCATCTCTGA
AA sequence Show only first row Show all	>Lus10020388 pacid=23144085 polypeptide=Lus10020388 locus=Lus10020388.g ID=Lus10020388.BGIv1.0 annot-version=v1.0 MAVALRRRFFCTQAVGNASGRHRPWSVKQVRKSNFTDSLVDEIKSQVSTSDFVAVSVQKTGSFSSPWHRPSPFDTPDIAYLKAKFAADRFQVFQLAICPF RIRAPTITAYPYNFHLFPRDETKVGIPPSYSFSCQSSSLLAMARDGFDFNACVNDGISYLSREQESMVKARADSPRPAKVDELGESASPLSVVDSIFIEK MKTRVKNWKNAVQDSSSNAKADTLMKALRRLIVETEKFESRPCMSIDVCSDRQAHLVAKMLQNYDDNLVPLMIPAKSGGSQAVRVVLTSSKEDRDLLLET LRNIDEEANKKNRGFREVIDLISSSQKPIVSHNSLNDLTFIHSKFLAPLPPSMEEFMVSLHKVLPTVIDVNHLVKETGLRKNVASIPYIISYLKHQFPAP VDVEIPFQVNEGEIHGHSVVSISELFAKLCCILKLTPDSEEQHVKNHGTSLHAFANNFHPQLQEPTDGEIGVWSSSNTKQVRCDDLVFLWGFRSGTTAGK LKTLLEDSHAVFSEGFHVRFVDKSCAIVVFSSPNSSKTFLNAMSNLPDTSSSSLRELASEGITATGYETYDRACKSGLWEANLADSLDKVIAADCRLESD QRIESADSRQKSELIIDFDHL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25430			Polynucleotidyl transferase, r...		Lus10020388 [exp]	0	1
AT1G19880			Regulator of chromosome conden...		Lus10033168 [exp]	8.3	0.9186
AT5G56740		HAG02, HAC7, HA...	histone acetyltransferase of t...		Lus10012916 [exp]	9.0	0.9096
AT5G27120			NOP56-like pre RNA processing ...		Lus10004143 [exp]	16.1	0.9182
AT5G39550		ORTH1, VIM3	VARIANT IN METHYLATION 3, ORTH...		Lus10039127 [exp]	17.6	0.9057
AT3G25430			Polynucleotidyl transferase, r...		Lus10009563 [exp]	25.5	0.9053
AT2G40550		ETG1	E2F target gene 1 (.1)		Lus10030540 [exp]	26.1	0.8999
AT4G02930			GTP binding Elongation factor ...		Lus10027995 [exp]	26.8	0.9086
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10027818 [exp]	30.9	0.9022
AT3G59670			unknown protein		Lus10008349 [exp]	33.0	0.8920
AT5G35910			Polynucleotidyl transferase, r...		Lus10005691 [exp]	37.5	0.9018

Compare expression of checked genes

Lus10020388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.