Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07480 216 / 8e-73 2Fe-2S ferredoxin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009565 [exp] 290 / 8e-102 AT3G07480 236 / 6e-81 2Fe-2S ferredoxin-like superfamily protein (.1) Lus10009568 [exp] 290 / 8e-102 AT3G07480 236 / 6e-81 2Fe-2S ferredoxin-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G239000 [exp] 239 / 3e-82 AT3G07480 236 / 5e-81 2Fe-2S ferredoxin-like superfamily protein (.1) Potri.014G177100 [exp] 234 / 4e-80 AT3G07480 239 / 2e-82 2Fe-2S ferredoxin-like superfamily protein (.1) Potri.003G182100 [exp] 40 / 0.0002 AT4G21090 260 / 2e-89 ARABIDOPSIS MITOCHONDRIAL FERREDOXIN 2, MITOCHONDRIAL FERREDOXIN 2 (.1.2.3) Potri.001G044700 [exp] 39 / 0.001 AT4G21090 259 / 6e-89 ARABIDOPSIS MITOCHONDRIAL FERREDOXIN 2, MITOCHONDRIAL FERREDOXIN 2 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020390 pacid=23144096 polypeptide=Lus10020390 locus=Lus10020390.g ID=Lus10020390.BGIv1.0 annot-version=v1.0 ATGGCGACCTCGAGGCTCTATCGACTCTCCTCCCAAATCCACCGTCTCTCTGCTTCATCATCTCCCTTAACCAAATCCATCATCACGCGCTCCTCCGCCA CTGCCGCCGCGGCCTCCGACGTAGCTCCCCGAGCTGGCACCGCCAAGGTCGCCGACAGGATCGTGAAGCTTTTCGCGATCGACCCGGAGGGACACAAGCG AGAGATCATCGGGCTCACGGGGCAGACTCTACTCAAGGCACTGACCAACCATGGCCTAATCGACCCTGCGTCCCACCGATTGGAGGACATCGATGCCTGC TCCGCAGAGTGCGAGGTCAGCATCGCGCAGGAGTGGCTCCAGAGGCTTCCCGACAGATCCTACGACGAGGAGTACGTGCTGAAGCGGAACTCCAGGGCTA GGGTGCTGAACCAGCACTCCAGACTGGGGTGCCAGGTTGTGATCACTTCTGATCTCCAAGGTATGGTTGTTGCCGTTCCTGAGCCTAGACCGTGGGACAC TCCGTAA
AA sequence Show only first row Show all	>Lus10020390 pacid=23144096 polypeptide=Lus10020390 locus=Lus10020390.g ID=Lus10020390.BGIv1.0 annot-version=v1.0 MATSRLYRLSSQIHRLSASSSPLTKSIITRSSATAAAASDVAPRAGTAKVADRIVKLFAIDPEGHKREIIGLTGQTLLKALTNHGLIDPASHRLEDIDAC SAECEVSIAQEWLQRLPDRSYDEEYVLKRNSRARVLNQHSRLGCQVVITSDLQGMVVAVPEPRPWDTP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07480			2Fe-2S ferredoxin-like superfa...		Lus10020390 [exp]	0	1
AT3G07480			2Fe-2S ferredoxin-like superfa...		Lus10009568 [exp]	1.0	0.8668
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10014530 [exp]	2.0	0.8608
AT5G09310			unknown protein		Lus10041297 [exp]	4.2	0.7357
AT1G11360			Adenine nucleotide alpha hydro...		Lus10039730 [exp]	6.0	0.7754
AT3G57560		NAGK	N-acetyl-l-glutamate kinase (....		Lus10030889 [exp]	7.5	0.7841
AT5G16380			Protein of unknown function, D...		Lus10026841 [exp]	12.2	0.7068
AT5G08060			unknown protein		Lus10034681 [exp]	15.8	0.7487
AT4G28100			unknown protein		Lus10039742 [exp]	19.8	0.6936
AT3G05500			Rubber elongation factor prote...		Lus10029892 [exp]	20.2	0.7184
AT5G13450		ATP5	delta subunit of Mt ATP syntha...		Lus10016414 [exp]	21.8	0.7351

Compare expression of checked genes

Lus10020390 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.