Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25440 387 / 5e-132 LOH1 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) AT4G13070 165 / 4e-47 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT2G28480 164 / 1e-46 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT3G27550 143 / 1e-37 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT4G29750 111 / 3e-26 CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G14510 111 / 5e-26 ATCFM3B CRM family member 3B (.1) AT3G23070 109 / 2e-25 ATCFM3A CRM family member 3A (.1) AT3G18390 107 / 8e-25 EMB1865 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G01370 97 / 2e-21 ATCFM2 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) AT5G16180 82 / 2e-16 CRS1, ATCRS1 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009566 [exp] 662 / 0 AT3G25440 431 / 4e-149 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Lus10009569 [exp] 231 / 2e-74 AT3G25440 123 / 5e-33 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Lus10040896 [exp] 174 / 2e-50 AT4G13070 336 / 2e-114 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Lus10041459 [exp] 166 / 6e-47 AT2G28480 417 / 3e-145 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Lus10034313 [exp] 165 / 1e-46 AT2G28480 416 / 4e-145 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Lus10022280 [exp] 134 / 3e-34 AT3G27550 486 / 1e-167 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Lus10003667 [exp] 134 / 6e-34 AT3G27550 481 / 9e-165 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Lus10027610 [exp] 114 / 5e-27 AT4G29750 676 / 0.0 CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10022091 [exp] 113 / 1e-26 AT3G23070 860 / 0.0 CRM family member 3A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G176900 [exp] 428 / 7e-148 AT3G25440 411 / 9e-141 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Potri.013G083000 [exp] 184 / 1e-54 AT4G13070 331 / 9e-113 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.007G129600 [exp] 166 / 6e-47 AT2G28480 403 / 1e-139 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.001G343700 [exp] 143 / 5e-37 AT3G27550 465 / 1e-158 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.010G077100 [exp] 116 / 6e-28 AT3G23070 927 / 0.0 CRM family member 3A (.1) Potri.006G148901 [exp] 110 / 4e-27 AT4G29750 314 / 4e-101 CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.001G350801 [exp] 103 / 1e-23 AT3G01370 972 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Potri.012G056100 [exp] 100 / 1e-22 AT3G18390 935 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.017G116700 [exp] 77 / 5e-15 AT5G16180 638 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Potri.006G163100 [exp] 48 / 9e-06 AT2G20020 644 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [flax] [poplar] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Lus10020391 pacid=23144137 polypeptide=Lus10020391 locus=Lus10020391.g ID=Lus10020391.BGIv1.0 annot-version=v1.0 ATGCAACCTTCTTACTTGAGCAGCTTGGTTGATGTTGTGTGCAAGGCTTGTCTTGAGAGGCCTCCTCCTACCAATGGTGTTCAAGTATCGCGTTCATGGA TTCATTCCAGTGCTTCGTTGGATAGTGCAGAACAAGATGTAAAATCTGCACCTGTAGATGGAGCTGGAAATGGTAAAGTGAAGAGGAAGAAGCTGAAAGG GAAACGAGCAGTTGTCAGGTGGTTGAGGTACTTTAGATGGAAGAAGAAGAAAGAGTATGAGAGAATGACAAATGAGGAGAAGATTCTCTATAAGCTAACA AAGGCTCGTAGGAAGGAGGAGAGGTTGATCGCAGCGATGAGCAAGATCGAACCTTCAGAATCGTTGGAAACAACTCATGATCCGGAGATACTGACGCCGG AGGAGCATTTCTTCTTCCTGAAGATGGGGATCAAGTGCAAGAACTATGTCCCCGTTGGAAGGCGCGGAATATACCAAGGAGTGATTCTGAACATGCATTT GCACTGGAAGAAACACCAGACACTCAAAGTGGTGGTGAAGACTTTTCCACCGGAGGAAGTCAAGGAGCTCGCTGCTGAGCTGGCGAGATTATCGGGAGGA ATCGTGCTGGACATTCACGACGGGAATGAGATCATCATGTACAGAGGGAAGAACTATGCTCAGCCGCCTACTGAGATCATGTCGCCGAGAGTCACTCTCA CCCGAAAGAAGGCACTTGATAAATCGAAATACAAGGACGCCCTTCGTGCCATTCGGAGGCACATTCCGAGGCTCGAGCAGGAGCTCGATCTGCTTCGTGT TCGTTCTTCCAAATTCAAGCCTCAAATTCAGGCCAATGATGCTACCCATCACGAAACTGACGACAGCATAATTTCCAACGATGAAGAAGCACAATGTCGA AGAATTTCGAGCTCGTCATTAGAAGCTTCCCCAAAGCTGAAACAGCTCTTGGAAGAAACGCAGGGGACCTCCGAGGAGGACGAGTCGGGTACAGATGATG ACGAAATGGTATCAGATTCAGAAGACCTGTCGGATATCTTCGAGACTGATTCCGATTCCGAGGAAACGGATGAACGCCCTCTATACCTTGACCAGTTCGA GAAGTTCCCCGTTCGAGACAACGGAGAACCTAAAGATTTCGAAGAGTATCTGAAGAAAGTATCTGGAGGAGATTCAGAGTCGTCGTCGTCACCCAGCCTC GACGAGGTTGATCGTATGTTCATACGTGCAGCTTCTCTGTTGAGGAACAACAAAAGGCGTGACAAATAA
AA sequence Show only first row Show all	>Lus10020391 pacid=23144137 polypeptide=Lus10020391 locus=Lus10020391.g ID=Lus10020391.BGIv1.0 annot-version=v1.0 MQPSYLSSLVDVVCKACLERPPPTNGVQVSRSWIHSSASLDSAEQDVKSAPVDGAGNGKVKRKKLKGKRAVVRWLRYFRWKKKKEYERMTNEEKILYKLT KARRKEERLIAAMSKIEPSESLETTHDPEILTPEEHFFFLKMGIKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFPPEEVKELAAELARLSGG IVLDIHDGNEIIMYRGKNYAQPPTEIMSPRVTLTRKKALDKSKYKDALRAIRRHIPRLEQELDLLRVRSSKFKPQIQANDATHHETDDSIISNDEEAQCR RISSSSLEASPKLKQLLEETQGTSEEDESGTDDDEMVSDSEDLSDIFETDSDSEETDERPLYLDQFEKFPVRDNGEPKDFEEYLKKVSGGDSESSSSPSL DEVDRMFIRAASLLRNNKRRDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25440		LOH1	LAG One Homologue 1, RNA-bindi...		Lus10020391 [exp]	0	1
AT4G12640			RNA recognition motif (RRM)-co...		Lus10025188 [exp]	1.4	0.8226
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10003795 [exp]	3.5	0.8241
AT3G52030			F-box family protein with WD40...		Lus10005328 [exp]	3.5	0.8221
AT5G64730			Transducin/WD40 repeat-like su...		Lus10003855 [exp]	7.2	0.8203
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10017026 [exp]	10.2	0.8122
AT4G32910			unknown protein		Lus10011625 [exp]	11.4	0.8176
AT5G26940		DPD1	defective in pollen organelle ...		Lus10031465 [exp]	12.5	0.7206
AT5G03070		IMPA-9	importin alpha isoform 9 (.1)		Lus10001480 [exp]	12.7	0.7669
AT2G31400		GUN1	genomes uncoupled 1 (.1)		Lus10003657 [exp]	17.8	0.7360
AT1G69630			F-box/RNI-like superfamily pro...		Lus10024695 [exp]	20.8	0.7652

Compare expression of checked genes

Lus10020391 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.