Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17020 1851 / 0 HIT2, ATXPO1, ATCRM1, XPO1A HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2) AT3G03110 1785 / 0 CRM1B, XPO1B exportin 1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009572 [exp] 2100 / 0 AT5G17020 1860 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2) Lus10038248 [exp] 2025 / 0 AT5G17020 1953 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2) Lus10025853 [exp] 1971 / 0 AT5G17020 1914 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2) Lus10037671 [exp] 52 / 3e-06 AT1G72560 1433 / 0.0 PAUSED, ARM repeat superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G088600 [exp] 1949 / 0 AT5G17020 1924 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2) Potri.019G052100 [exp] 1943 / 0 AT5G17020 1919 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2) Potri.012G073600 [exp] 48 / 5e-05 AT5G62600 1450 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1) Potri.001G168100 [exp] 45 / 0.0005 AT1G72560 1420 / 0.0 PAUSED, ARM repeat superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08389 [flax] [poplar] Xpo1 Exportin 1-like protein CL0020 [flax] [poplar] TPR PF08767 [flax] [poplar] CRM1_C CRM1 C terminal CL0020 [flax] [poplar] TPR PF03810 [flax] [poplar] IBN_N Importin-beta N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10020393 pacid=23144064 polypeptide=Lus10020393 locus=Lus10020393.g ID=Lus10020393.BGIv1.0 annot-version=v1.0 ATGGCGGCGGAAAGGCTCCTCGATTTGTCACATCCAATGGATGTGTCCTTGCTCGATGCTACCGTCGATGCTTTCTACGGAACTGGATCCAAGGACGAGA GGGCAGCTGCAGATAGGATCTTGCAGGATTTGCAAGGCAAGCCGGATATGTGGCTTCAAGTGGTGCATATTTTACAAAGCACCAAGAATCTTAACACCAA GTTCTTTGCGTTGCAGGTCCTAGAGGGGGTTATCAAATACCGATGGAATGCATTGCCTGCTGAGCAACGAGATGGAATGAAGAACTACATTTCTGAAGTT ATTGTGCAGCTTTCAAGCGACGGGGCTTCTTTTCGTCAAGAAAGGCTGTATGTCAACAAGCTTAATGTAATTTTAGTACAGATTTTGAAGCATGAATGGC CATCTAGGTGGCGAAGTTTTATTCCTGATCTTGTTGCAGCAGCAAAGACTAGTGAAACAGTTTGCGAAAATTGCATGACTATCTTGAAGCTTCTGAGTGA AGAAGTTTTTGATTTCTCTCGAGGGGAGATGACTCAACTTAAGATAAAGGAACTTAAGCAATCGCTGAACAGCGAGTTTCAACTCATTCATGAGCTGTGC TTATACGTACTTTCCGTATCTCAAAGAACGGAGCTCATTCAAGCGACACTGGCCACTTTACATGCTTTTCTTTCCTGGATCCCACTGGGCTACATTTTTG AATCCCCATTGCTGGAAACACTTCTGAAGCTTTTCCCTATCCCATTATATAGAAATTTGGCTCTCCAGTGTCTGACTGAGGTTGCTGGTCTTAGTTTCGG TGAATATTACAATGGGCAGTACATAAAGATGTACAATTTCTTTATGGTCCAGTTGCAGGCCATTCTCCCTCCGACCACAAATATTCCCGAGGCTTATAGT AATGGATCTAGCGAGGAACAGGCATTTATTCAGAACTTGGCACTGTTTTTCACATCTTTTTGCAAGGCAAGCATCCTTTCCGGATTCACTATACATTTTG GACAGTTGATTGTTGTGCTTGACTGGTTCCTCATGCGGAAAGAATATCTAATTACACCTGACATACTCTTGCTGCAGGCTCATATTCAGATACTGGAATC TAGTCAAGAGAACATATCGGCTCTGATAATGGGTCTTGAATATCTCATTAAAATTTCATATGTCGATGAGACTGAAGTATTTAAGGTTTGCTTGGATTAC TGGAACTCCTTGGTCTTGGAGCTCTTTCAGGCCCATCATAATCTTGACAATCCTGCATTAACTGCTAACATGATCCATATACCTCTGCTTCATGGTCTAG TTGATGGCATGGGTTCTTCTATCATTCAGCGAAGGCAGCTTTACAGTGATACAATGTCCAAGTTGCGAATGCTTATGATATGTCGAATGGCTAAGCCTGA AGAAGTTCTCATAGTTGAAGATGAAAATGGAAATATTGTTCGTGAAACCATGAAAGATAATGATGTGCTTGTTCAATACAAGATTATGAGAGAAACATTG ATCTACTTGTCACATCTTGATCACGTAGACACAGAAAAGCAGATGTTAAAAAAGTTAAGAAACCAATTAACTGGGGAAGATTGGAGTTGGAACAACTTAA ACACACTGTGCTGGGCTATAGGGTCCATCTCTGGCTCAATGGCGGAAGAGCAAGAAAATAGATTTCTAGTTATGGTCATCCGTGATTTATTGAATTTGTG CGAGATCACCAGAGGCAAAGACAATAAAGCTGTTATTGCAAGTAACATCATGTACGTTGTTGGACAGTATCCAAGATTCCTTCGAGCTCATTGGAAATTT CTGAAAACTGTTGTCAATAAACTATTCGAGTTCATGCATGAGCCTCACCCTGGTGTTCAGGATATGGCTTGTGATACTTTCCTGAAAATTGTTCAGAAAT GCAAGCGGAAGTTTGTTATCTTACAGGTTGGAGAAAGTGAGACATTTGTGTCTGAACTTTTGACGGGTCTTTCTTCGACTGTCGGTGATCTCGAGCATCA TCAAATTCACACGTTCTATGAATCTGTTGGGCAAATGATTCAAGCAGAATCTGACCCACAGAAGAGAGATGAATACTTGCAGAGGCTCATGACTTTGCCG AACCAGAAATGGGCTGAGATTATTGCACAAGCACGTCAAAGTGTAGATTTTCTGAAAGATCAAGAAGTGATTAGAACTGTGCTTAATATATTGCAGACAA ATACAAGTGTTGCAAACTCTCTCGGGACTTACTTCTTGCCTCAGATTACTCTGATCTTTTTGGACATGCTTAATGTGTACAGAATGTATAGTGAGCTCAT TTCAAGCACTATTGCAAACGGAGGTCCATATGCGTCAAGAACATCTTATGTGAAACTGTTAAGGTCTGTTAAGAGGGAGACACTTAAGCTCATCGAGACA TTTTTGGACAAGGCTGAGAACCAGCCACAGATTGGGAAGCAATTTGTTCCTCCAATGATGGATCCTGTTCTGGGTGATTATGCTCGGAATTTGCCCGATG CTAGAGAATCCGAGGTTCTCTCACTATTCGCGACAATTATTAACAAGTACAGATCTACAATGATAGATGATGTTCCTCGCATTTTCGAAGCTGTTTTCCA GTGTACTTTAGAGATGATCACAAAGAATTTTGAAGACTACCCTGAACATCGTCTCAAGTTCTTTTCGCTACTCCGCGCAATTGCTACTCATTGTTTTCCC GCTTTGGTCCATTTGTCCAGTCCACAACTAAAGCTTGTAATGGACTCGATAATTTGGGCTTTTCGGCATACAGAAAGGAACATTGCAGAAACAGGGTTGA ACTTGTTAATAGAGATGCTGAAGAACTTTGAGAAATCGGAGTTCTGTAATCAGTTCTACCAGACATACTTCATAACGATTGAGCAAGAGATTTTTGCGGT GCTGACGGATACGTTTCACAAGCCTGGGTTCAAGTTGCACGTCTCTGTGCTACACCACTTGTTCCGCCTGGTCGAGAGTGGTGCGCTGACGGAGCCTTTG TGGGATGCCGCAACAGTTCCATATCCGTACCCTAACAATTCGATGTTTGTTCGAGAGTATACCATTAAGCTACTGGGTACTTCGTTCCCCAACATGACTG TAGCAGAGGTTGGTCAATTCGTGAACGGACTCTTCGAATCACAAAATGAGTTGTCGGGGTTCAAAGACCGCATAAGAGACTTCCTTATCCAGTCCAAAGA ATTTTCAGCTCAGGACAACAAGGATCTTTATGCTGAAGAAGCTGCTGCCCAAAGAGAGCAAGACAGACGGCGAATGCTATCCATTCCGGGACTTATCGCC CCTAACGAGATACAAGACGAGATGTTGGATTCTTAG
AA sequence Show only first row Show all	>Lus10020393 pacid=23144064 polypeptide=Lus10020393 locus=Lus10020393.g ID=Lus10020393.BGIv1.0 annot-version=v1.0 MAAERLLDLSHPMDVSLLDATVDAFYGTGSKDERAAADRILQDLQGKPDMWLQVVHILQSTKNLNTKFFALQVLEGVIKYRWNALPAEQRDGMKNYISEV IVQLSSDGASFRQERLYVNKLNVILVQILKHEWPSRWRSFIPDLVAAAKTSETVCENCMTILKLLSEEVFDFSRGEMTQLKIKELKQSLNSEFQLIHELC LYVLSVSQRTELIQATLATLHAFLSWIPLGYIFESPLLETLLKLFPIPLYRNLALQCLTEVAGLSFGEYYNGQYIKMYNFFMVQLQAILPPTTNIPEAYS NGSSEEQAFIQNLALFFTSFCKASILSGFTIHFGQLIVVLDWFLMRKEYLITPDILLLQAHIQILESSQENISALIMGLEYLIKISYVDETEVFKVCLDY WNSLVLELFQAHHNLDNPALTANMIHIPLLHGLVDGMGSSIIQRRQLYSDTMSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETL IYLSHLDHVDTEKQMLKKLRNQLTGEDWSWNNLNTLCWAIGSISGSMAEEQENRFLVMVIRDLLNLCEITRGKDNKAVIASNIMYVVGQYPRFLRAHWKF LKTVVNKLFEFMHEPHPGVQDMACDTFLKIVQKCKRKFVILQVGESETFVSELLTGLSSTVGDLEHHQIHTFYESVGQMIQAESDPQKRDEYLQRLMTLP NQKWAEIIAQARQSVDFLKDQEVIRTVLNILQTNTSVANSLGTYFLPQITLIFLDMLNVYRMYSELISSTIANGGPYASRTSYVKLLRSVKRETLKLIET FLDKAENQPQIGKQFVPPMMDPVLGDYARNLPDARESEVLSLFATIINKYRSTMIDDVPRIFEAVFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFP ALVHLSSPQLKLVMDSIIWAFRHTERNIAETGLNLLIEMLKNFEKSEFCNQFYQTYFITIEQEIFAVLTDTFHKPGFKLHVSVLHHLFRLVESGALTEPL WDAATVPYPYPNNSMFVREYTIKLLGTSFPNMTVAEVGQFVNGLFESQNELSGFKDRIRDFLIQSKEFSAQDNKDLYAEEAAAQREQDRRRMLSIPGLIA PNEIQDEMLDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10020393 [exp]	0	1
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Lus10015971 [exp]	3.5	0.9062
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10009572 [exp]	3.9	0.8951
AT5G06350			ARM repeat superfamily protein...		Lus10029399 [exp]	3.9	0.9019
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Lus10025508 [exp]	4.6	0.9153
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Lus10026261 [exp]	15.1	0.8916
AT1G26170			ARM repeat superfamily protein...		Lus10035079 [exp]	15.9	0.8735
AT4G17610			tRNA/rRNA methyltransferase (S...		Lus10011019 [exp]	16.9	0.8869
AT4G38760			Protein of unknown function (D...		Lus10012168 [exp]	18.7	0.8990
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10038248 [exp]	20.2	0.8815
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Lus10009940 [exp]	25.0	0.8548

Compare expression of checked genes

Lus10020393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.