Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36740 364 / 5e-125 ATSWC2 sequence-specific DNA binding transcription factors;DNA binding;DNA binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009576 [exp] 499 / 3e-178 AT2G36740 351 / 4e-120 sequence-specific DNA binding transcription factors;DNA binding;DNA binding (.1) Lus10029400 [exp] 44 / 1e-05 AT4G38495 100 / 4e-29 unknown protein Lus10004196 [exp] 42 / 9e-05 AT4G38495 166 / 2e-54 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G412800 [exp] 400 / 3e-139 AT2G36740 350 / 7e-120 sequence-specific DNA binding transcription factors;DNA binding;DNA binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05764 [flax] [poplar] YL1 YL1 nuclear protein PF08265 [flax] [poplar] YL1_C YL1 nuclear protein C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10020396 pacid=23144193 polypeptide=Lus10020396 locus=Lus10020396.g ID=Lus10020396.BGIv1.0 annot-version=v1.0 ATGGAGACCTCCAAAGAAGAAGATGCGCCGGTTGTGTTCCTCGACAGAACGGCTCGCGCCACCAGAGGCAAGAGGATGACGAAACTGCTAGATGATGAAG TTGAAGAGGATGAGACATTCTGGAACCAGGACGCTCTGAAAGAGGATGAACATGATGATAACTATCAAGAAGAGACTGAAGCTCCTGACGAGTTCGATAG CGATTTCGATGACGATGAGCCTGAGCCGGATGATGAAGCTGAAAATGAAGCACTGGAGAAGAGGCCTCCGAAGAAGAGGCTTATATTCCCTGGGAAGACT CTTCCCAAAAAGAAGAAGAAGAAAGAGTTGTCGAAGTTGGATACCGAGACTTCCTCCAGAGATGAGAAGCCAGATGAGCAGACTACTACTACTACTACTA CTCCCCCTGAACACCATGATGTCCCTGATGAGGTTGAAGGTGAGAGAGTTGTTAGGAAGTCTACGAGGACGTCAGTTATCGTCAGGCAAGCCGAGAGGGA CGCGATACGTGCTGCTTTACAGGCCACGATGAAGCCAATAAAAAGGAAAAAGGAAGGGGAGGAGAAAAAAATGTCACAAGAAGAAATGCTTCTTGAAGCA GCTCAAACGGAAATCATGAATTTGAGGAACTTAGAGCGTGTTTTAGCAAGGGAGGAAGAAGTCAAGAAAAGAGCTGCTGTGAACAAGGCTGTATATAGTG GCCCACAGATTCGGTTCTCTTCCAAGGACGGTCGCACGTATCTTGAATTCAAAGGAATTTCATTTCATTCCCAACTTTCAACAACTCCTACTCCATATCC GGAGAAGGCTGTATGTCTTGTAACAGGATTGCCTGCCAAGTACCTTGATCCAAAGACAAGGCAACCCTATGCGACGATAGAAGCTTTCAAAATCATCCGG CAACGGTTCGAGGACGAGAGGAACAAGAACCTCAACAAGGAGATGGACATGGGCGTCCTGTTCAATGCGCTAAAGGGGAAAGGATTCTTGATCAGGAAGA AACGTTCTCCGTTTTTCGCCATAAAGAAGAACACACACTTCTCGTACTTCCCTCCTCCTTGCAGGATACCAACCATAGATTTCGATGATTCGGACTGA
AA sequence Show only first row Show all	>Lus10020396 pacid=23144193 polypeptide=Lus10020396 locus=Lus10020396.g ID=Lus10020396.BGIv1.0 annot-version=v1.0 METSKEEDAPVVFLDRTARATRGKRMTKLLDDEVEEDETFWNQDALKEDEHDDNYQEETEAPDEFDSDFDDDEPEPDDEAENEALEKRPPKKRLIFPGKT LPKKKKKKELSKLDTETSSRDEKPDEQTTTTTTTPPEHHDVPDEVEGERVVRKSTRTSVIVRQAERDAIRAALQATMKPIKRKKEGEEKKMSQEEMLLEA AQTEIMNLRNLERVLAREEEVKKRAAVNKAVYSGPQIRFSSKDGRTYLEFKGISFHSQLSTTPTPYPEKAVCLVTGLPAKYLDPKTRQPYATIEAFKIIR QRFEDERNKNLNKEMDMGVLFNALKGKGFLIRKKRSPFFAIKKNTHFSYFPPPCRIPTIDFDDSD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36740		ATSWC2	sequence-specific DNA binding ...		Lus10020396 [exp]	0	1
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10019024 [exp]	5.5	0.8185
AT4G32910			unknown protein		Lus10011625 [exp]	7.3	0.8160
AT1G73875			DNAse I-like superfamily prote...		Lus10032490 [exp]	12.8	0.7897
AT1G28210		ATJ1	DNAJ heat shock family protein...		Lus10020949 [exp]	15.3	0.7591
AT2G29200		APUM1	pumilio 1 (.1)		Lus10004976 [exp]	16.2	0.8121
AT2G47620		CHB1, ATSWI3A	SWITCH/sucrose nonfermenting 3...		Lus10032555 [exp]	20.1	0.7753
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10017026 [exp]	20.7	0.7792
AT5G24670		TAD3, EMB2820	tRNA adenosine deaminase 3, EM...		Lus10016480 [exp]	21.6	0.7728
AT1G08220			unknown protein		Lus10005355 [exp]	22.3	0.7975
AT1G33420			RING/FYVE/PHD zinc finger supe...		Lus10039160 [exp]	25.7	0.7477

Compare expression of checked genes

Lus10020396 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.