Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75660 768 / 0 AtXRN3, XRN3 5'-3' exoribonuclease 3 (.1) AT1G54490 763 / 0 ATXRN4, XRN4, EIN5, AIN1 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) AT5G42540 732 / 0 AtXRN2, XRN2 exoribonuclease 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004119 [exp] 746 / 0 AT1G54490 1140 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10000941 [exp] 632 / 0 AT1G54490 1092 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10013326 [exp] 555 / 9e-180 AT1G75660 636 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10034514 [exp] 536 / 9e-172 AT1G75660 968 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10015946 [exp] 514 / 4e-164 AT1G54490 1033 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10012434 [exp] 510 / 4e-161 AT1G75660 1291 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10013328 [exp] 444 / 2e-140 AT1G75660 516 / 2e-171 5'-3' exoribonuclease 3 (.1) Lus10024327 [exp] 406 / 2e-123 AT1G75660 1162 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10009577 [exp] 333 / 9e-107 AT5G42540 201 / 2e-60 exoribonuclease 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G070200 [exp] 938 / 0 AT1G54490 779 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.005G237500 [exp] 782 / 0 AT1G75660 1246 / 0.0 5'-3' exoribonuclease 3 (.1) Potri.005G048900 [exp] 772 / 0 AT1G54490 1231 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.013G035600 [exp] 745 / 0 AT1G54490 1175 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.002G024100 [exp] 719 / 0 AT1G75660 1137 / 0.0 5'-3' exoribonuclease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [flax] [poplar] PIN PF03159 [flax] [poplar] XRN_N XRN 5'-3' exonuclease N-terminus
Representative CDS sequence Show only first row Show all	>Lus10020397 pacid=23144146 polypeptide=Lus10020397 locus=Lus10020397.g ID=Lus10020397.BGIv1.0 annot-version=v1.0 ATGGGAATACCGTCGTTCTACAAGTGGCTGGTTGACCGGTACCCGCTCTCTGTGGTCGACGTGGTGGAGGAAACTCCGACTCTTGAGAACGATCGTCCCG TCCCCGTCGACGCCTCACTGCCGAACCCCAACGGTTACGAGTATGACAATCTGTATCTCGACATGAACGGGATAATCCACCCCTGCTTCCATCCAGAAGG ACTTCCGGCGCCGAAAGATTACGATGAGGTCTTCCAGGCGGTTTTCATGTACATCGATAGAATCTTCAGCATTGTTCGCCCTCGGAAGCTTCTGTACTTG GCTGTCGATGGTGTTGCTCCTCGAGCTAAGATGAATCAACAACGGTCCAGGAGATTCAGGGCTGCTAAGGATATGGAAGATGCAGCTGCCACGAAAAAGG CTGAGGGACTTGAATCAGGGGAAAATGAACCGGGTGTAACCGAGCAATCGAACAAGTTGGACTCAAATATAATCACCCCAGGAACTGAGTTTATGGAATT GTTGTCTTCAGCTCTACGTTACTATATACACTTGCGGATGAATGAGGAGCCAGGGTGGAATGGAATCAAGGTCATTCTTTCAGATGCCAGTGTGCCAGGT GAGGGGGAGCACAAGATAATATCATACATACGCTTGCAACGTAATCTTCCTGGGTTTAATCCAAACACCCGGCATTGTCTGTATGGCTTGGATGCAGATC TAATCATGCTTGCATTGGCTACTCATGAAGTTCATTTTTCTGTCCTGAGAGAGGAGGTTCACAATAAACGCAAAGTTACTGAAGATGATGACTCTGGAGT TATTTCTACTGATTCGTTCCTCAACATTTGGATTCTGAGGGAGTACCTAGCATATGACTTAAGAATTCCAGACTCAGATTCGAAAGCTGATCTAGAGCGT GTGATTGACGACTTCGTTTTCATGTGTTTGTTTGTTGGAAATGATTTTCTGCCGCACATACCATCCCTTTCAATCTCTGAGGGTGCTATTGATTTGCTAA TGATGCTTTATAGAAAGGAATTTGTCAAGATGGGTGGCTACCTAACTGACTCTTTTAAGATAAATTTGGAACGTGTGGAGCACTTCATCCAAGCGTTGGG ATCCTATGAAAGTACAGTTTTCAGGAAGCGTATGCAGAAAGAAAAGGCATGGGGGAGGCGTAACAATGGTGGTTCATACCGTACCCAAGCTGTTGAACAC CTTAATCAGTTGGGTAAAGATTCTAGCATTTCATTAGCAGGAGATGTAGCTAAAGACCCACTAGACGTGGGCAAAGGTATAGTCGCTCAACAATCTACTG ACGGCTCAACTGCTGAGACTGACAAGGTTAAACTCGGAGAAGATGGTTGGAGAGAGAGATATTATGTGCATAAATTCCAGCTCAACTCCGAAGATGAATG TGAGAGAGTTCAGCGAGAACTGGTGATAAAATATATAGAAGGAATATCCTGGGTCATGCATTACTACTACGAAGGTGTATGCTCGTGGCAGTGGTTTTAT CCTTACCATTACGCCCCGTTTGCTTCAGATTTTCATGATTTCAGTCATTTAAAAATCACATTCACGCTCGGGAAACCTTTCAAGCCTTTTGATCAGTTAA TGGGTGTACTTCCAGCTGCAAGTGCGCATGCCCTCCCTCTAGCTTATGGGCAATTGATGAAGAATGACTCACCTATCGCCGACCTTTATCCTACAGATTT TGAAATCGATATGGAGGGAAAACGGTTCTCTTGGCAGGGTCTCTGTAAATTGCCATTCATTGATGAGGCGCGTCTTCTTTCAGAAATTGCAAAAGTGGAG AATTCATTAACGGATGAAGAGAAAAGGAGGAACAGCTTGGGTTTGGACCTCTTGCTTTTTCATAAATCGAATCCAATGGCTGCTCTTGTATCATCCTCTG AAAAGGATTCCCAGCAGGAGTTGCCCAATGTGAACGTAGAACTGGCAATTGACCCTAAATTCAGCGATGGTATGAACGGATATATTACCGTCAATCAACA CCCCTTCTGTCCAGCGGAAATTTCTTCACCTCTGGATTGCTGGCCAGTGATTGTAAATACCGGAGTTGTAACTGTCTCTTACAAGTTTCCTCCGTATCAT CCTCACATTCCAAACCTTCCGGAAGGTGTATCCTTGCCTAAAAAGTCTGTGAGCAAGAGGGACATTAATCCTCCTGCTCTCTTGCTTTACGATGGAGCGT CAAACCGTCTCTATTCTAGAAAGTTGATGCCTATGTCTGTTTACGGACCCGGTCTATCTAAATTGGCGCATCAACTTGTTTATCGGTATACCGAGACTTG TAAAAACGATGACAAGAAAATCTCCAAGCTGAGTGTGGGACAGCAAGATAGTCAAACTACTCTCACACCAATAAGCATCGTCAGTAAAATGAACGAAATT ATCGCATCGCTAGGTGGAGGAGGCGGCAATGCTATTGGGAAATCCAGTGCGAGTAATACTGGAAACGAGAAGAGAAAGGTGAAGGAGGTCAAATCCAAGA AGAGGAAAAGGAAGGCTGTAAAAGAAGTTCCCAGTGAGAGTGAACGATATACCAGTAAGACTGCTGGTGCTAGTAATGAGAAGACCAAGACGGTATCTGA AACCAAATCTGAGAAAAGGAAAAGGAAAGCTGAGAAGAAGCAAGAGTGTGATGCTGCTGGAAAAGAGAATAGAGAAACTCAGGAGACGGTAACAGAAGTC GAATCAAGGAAAAAGAGAAGGAAAGCTGAGAAGATGCAGGAAGGTGCTGTTAATGGAAAAGGCGATGGAGAAACACAGAAGACGGTTACAGAAGCTGAAT CCAAGAAGCAAGAGTGTGATGCTGCTGGAAAAGAGAATAGAGAAACTCAGGAGACGGTAACAGAAGTCGAATCAAGGAAAAAGAGAAGGAAAGCTGAGAA GATGCAGGAAGGTGCTGTTAATGGAAAAGGCGATGGAGAAACACAGAAGACGGTTACAGAAGCTGAATCCAAGAAGCAAGAGTGTGATGCTGCTGGAAAA GAGAATAGAGAAACTCAGGAGACGGTAACAGAAGTCGAATCAAGGAAAAAGAGAAGGAAAGCTGAGAAGATGCAGGAAGGTGCTGTTAATGGAAAAGGCG ATGGAGAAACACAGAAGACGGTTACAGAAGCTGAATCCAAGAAGCAAGAGTGTGATGCTGCTGGAAAAGAGAATAGAGAAACTCAGGAGACGGTAACAGA AGTCGAATCAAGGAAAAAGAGAAGGAAAGCTGAGAAGATGCAGGAAGGTGCTGTTAATGGAAAAGGCGATGGAGAAACACAGAAGACGGTTACAGAAGCT GAATCCAAGAAAAGGAAGAGGAAAGAGAAGAAGATGCAGGCCGGCGATGCTACTGGAAAAGATGATGGAGAAACACAGAAGATGGTAACAGAATCCGAAT CGAAGAAAAAGAAAAGGAAAGAGAAGAAGATGCAAGAAGGTGATGCTGCTGGAGATAATGACAGAGAAGTACAGAAGACGGTAACAGAAGCGGAATCAAA GAGAAAGAGAAGGAAAGAGAGGAAGATGCAGGAAGGTGATGCCCCTGGAGATGACAATGGAGAAACACAGAAGATGGTAACAGAAGCGGAATCGAAGAAA AGGAAAGAGAAGAAGATGCAGGAAGGTGATGCCGCTGGAAAAAATGACGGAGAAACACAGAAGATGGTAACAGAATCCGAGTCTAAGAAAAAGAAAAGGA AAGAGAAGAAGAAGCAGGAAGACAATGGAGAAACACAGAAGACGTTGACAGCATAA
AA sequence Show only first row Show all	>Lus10020397 pacid=23144146 polypeptide=Lus10020397 locus=Lus10020397.g ID=Lus10020397.BGIv1.0 annot-version=v1.0 MGIPSFYKWLVDRYPLSVVDVVEETPTLENDRPVPVDASLPNPNGYEYDNLYLDMNGIIHPCFHPEGLPAPKDYDEVFQAVFMYIDRIFSIVRPRKLLYL AVDGVAPRAKMNQQRSRRFRAAKDMEDAAATKKAEGLESGENEPGVTEQSNKLDSNIITPGTEFMELLSSALRYYIHLRMNEEPGWNGIKVILSDASVPG EGEHKIISYIRLQRNLPGFNPNTRHCLYGLDADLIMLALATHEVHFSVLREEVHNKRKVTEDDDSGVISTDSFLNIWILREYLAYDLRIPDSDSKADLER VIDDFVFMCLFVGNDFLPHIPSLSISEGAIDLLMMLYRKEFVKMGGYLTDSFKINLERVEHFIQALGSYESTVFRKRMQKEKAWGRRNNGGSYRTQAVEH LNQLGKDSSISLAGDVAKDPLDVGKGIVAQQSTDGSTAETDKVKLGEDGWRERYYVHKFQLNSEDECERVQRELVIKYIEGISWVMHYYYEGVCSWQWFY PYHYAPFASDFHDFSHLKITFTLGKPFKPFDQLMGVLPAASAHALPLAYGQLMKNDSPIADLYPTDFEIDMEGKRFSWQGLCKLPFIDEARLLSEIAKVE NSLTDEEKRRNSLGLDLLLFHKSNPMAALVSSSEKDSQQELPNVNVELAIDPKFSDGMNGYITVNQHPFCPAEISSPLDCWPVIVNTGVVTVSYKFPPYH PHIPNLPEGVSLPKKSVSKRDINPPALLLYDGASNRLYSRKLMPMSVYGPGLSKLAHQLVYRYTETCKNDDKKISKLSVGQQDSQTTLTPISIVSKMNEI IASLGGGGGNAIGKSSASNTGNEKRKVKEVKSKKRKRKAVKEVPSESERYTSKTAGASNEKTKTVSETKSEKRKRKAEKKQECDAAGKENRETQETVTEV ESRKKRRKAEKMQEGAVNGKGDGETQKTVTEAESKKQECDAAGKENRETQETVTEVESRKKRRKAEKMQEGAVNGKGDGETQKTVTEAESKKQECDAAGK ENRETQETVTEVESRKKRRKAEKMQEGAVNGKGDGETQKTVTEAESKKQECDAAGKENRETQETVTEVESRKKRRKAEKMQEGAVNGKGDGETQKTVTEA ESKKRKRKEKKMQAGDATGKDDGETQKMVTESESKKKKRKEKKMQEGDAAGDNDREVQKTVTEAESKRKRRKERKMQEGDAPGDDNGETQKMVTEAESKK RKEKKMQEGDAAGKNDGETQKMVTESESKKKKRKEKKKQEDNGETQKTLTA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10020397 [exp]	0	1
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10034676 [exp]	1.0	0.9526
AT2G17580			Polynucleotide adenylyltransfe...		Lus10016699 [exp]	3.2	0.9373
AT3G59820			LETM1-like protein (.1.2)		Lus10025602 [exp]	3.5	0.9387
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10040808 [exp]	4.2	0.9433
AT4G03180			unknown protein		Lus10040902 [exp]	6.9	0.9220
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10023817 [exp]	9.2	0.9302
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Lus10019147 [exp]	11.0	0.9305
AT1G27090			glycine-rich protein (.1)		Lus10037224 [exp]	11.5	0.9388
AT2G34650		ABR, PID	PINOID, ABRUPTUS, Protein kina...		Lus10036150 [exp]	12.4	0.9112
AT5G64200		ATSC35, At-SC35	ARABIDOPSIS THALIANA ORTHOLOG ...		Lus10023802 [exp]	16.6	0.8956

Compare expression of checked genes

Lus10020397 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.