Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48480 110 / 3e-31 Lactoylglutathione lyase / glyoxalase I family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009579 [exp] 274 / 1e-95 AT5G48480 111 / 2e-31 Lactoylglutathione lyase / glyoxalase I family protein (.1) Lus10020400 [exp] 251 / 2e-86 AT5G48480 111 / 2e-31 Lactoylglutathione lyase / glyoxalase I family protein (.1) Lus10009580 [exp] 246 / 8e-85 AT5G48480 112 / 4e-32 Lactoylglutathione lyase / glyoxalase I family protein (.1) Lus10002100 [exp] 42 / 6e-05 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G251200 [exp] 156 / 4e-49 AT5G48480 91 / 2e-23 Lactoylglutathione lyase / glyoxalase I family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0104 [flax] [poplar] Glyoxalase PF06983 [flax] [poplar] 3-dmu-9_3-mt 3-demethylubiquinone-9 3-methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10020399 pacid=23144112 polypeptide=Lus10020399 locus=Lus10020399.g ID=Lus10020399.BGIv1.0 annot-version=v1.0 ATGGCGCAACCAGTTGCTGAGGTCCACAATGGTGCTTCCGAGATGGCAGAGGTCGTGGTGTCTTTCACCGCGGTGAAGCCGCAGCTACTCGTGGAGGCGC CCAAGGCTAACGACGCTGTGGAATTCTACAAGGCTGCTTTCGGTGCTGTGGAGACTGGCCGTACGACTCATCCTAAGCGCAAGGCTGACCAGGAGCTCCC TCAGATCATCTCTGCTCAGCTCCAGGTCGCCGGCACCACTATCCTCGTCTCTGACCATTCTGGCGAGTCTGCAACAGCCGGAACTGGGCTGTCACTCTGC TTGGAGACAAACGATCTCGATGCCGCAGTATCCAAGGCCATCGCCGCCGGAGCTACTTCCGAGGGGGGTGAGACCACTGAGTCTGACGGCGCGTGCTGTG GAAGTGGCGTGGGGAAGAAAGTGAAGGACCCCTATGGATTTGTTTGGCTCATCTGCTCTCCTCCAGCTGCAGCCTCTGCTGCTGAGGTGGAGGCCTGA
AA sequence Show only first row Show all	>Lus10020399 pacid=23144112 polypeptide=Lus10020399 locus=Lus10020399.g ID=Lus10020399.BGIv1.0 annot-version=v1.0 MAQPVAEVHNGASEMAEVVVSFTAVKPQLLVEAPKANDAVEFYKAAFGAVETGRTTHPKRKADQELPQIISAQLQVAGTTILVSDHSGESATAGTGLSLC LETNDLDAAVSKAIAAGATSEGGETTESDGACCGSGVGKKVKDPYGFVWLICSPPAAASAAEVEA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48480			Lactoylglutathione lyase / gly...		Lus10020399 [exp]	0	1
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10017292 [exp]	2.6	0.9757
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10003904 [exp]	3.2	0.9693
AT4G27660			unknown protein		Lus10032928 [exp]	3.5	0.9738
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10037371 [exp]	5.5	0.9749
AT2G24440			selenium binding (.1)		Lus10026958 [exp]	5.9	0.9659
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10041347 [exp]	6.3	0.9711
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10004945 [exp]	9.8	0.9599
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10021157 [exp]	10.4	0.9631
AT3G02400	FHA		SMAD/FHA domain-containing pro...		Lus10042052 [exp]	11.1	0.9393
AT3G12210			DNA binding (.1.2)		Lus10007717 [exp]	16.1	0.9450

Compare expression of checked genes

Lus10020399 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.