Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48480 111 / 1e-31 Lactoylglutathione lyase / glyoxalase I family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009580 [exp] 288 / 5e-101 AT5G48480 112 / 4e-32 Lactoylglutathione lyase / glyoxalase I family protein (.1) Lus10009579 [exp] 254 / 1e-87 AT5G48480 111 / 2e-31 Lactoylglutathione lyase / glyoxalase I family protein (.1) Lus10020399 [exp] 251 / 2e-86 AT5G48480 110 / 4e-31 Lactoylglutathione lyase / glyoxalase I family protein (.1) Lus10002100 [exp] 48 / 9e-07 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G251200 [exp] 178 / 7e-58 AT5G48480 91 / 2e-23 Lactoylglutathione lyase / glyoxalase I family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0104 [flax] [poplar] Glyoxalase PF06983 [flax] [poplar] 3-dmu-9_3-mt 3-demethylubiquinone-9 3-methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10020400 pacid=23144127 polypeptide=Lus10020400 locus=Lus10020400.g ID=Lus10020400.BGIv1.0 annot-version=v1.0 ATGGCGGAACAAGCTGATGTCCACAATGGAGGTGCTGAGAAGGCTGAGGTGGTGGTCTCCTTCACCGCGATGAAGCCGCAGCTGTTTGTGGAGGCGCCCA AGGCTAACGACGCTGTGGAGTTCTATAAGGCTGCTTTCGGTGCTGTGGAGACTGGCCGTACGACTCAACCCAAGCGCAAGGCGGACCAGGAGCTTCCTCA GATCATCTCCGCTCAGCTCCAGCTCGCCGGCACCACCATTCTCGTCTCTGACCATTCCGACGAATCTGCTCCTGCCGGAACCGGACTGTCACTCTGCTTG GAGACTAATGACGTCGATGGCGCCGTCTCAAAGGCCATGGGAGCTGGAGCTACCTCGGAGGGAGAGATTGATGAGTCTGACGGCGCATGCTGTGGAGGTC GCGTGGGAAAAGTGAAGGATCCTTACGGATTTGTGTGGCTCATCTGCTCCTCCTCCCCAGCTCCCAAGTGCGGCGGTGGTGGTGGTGGTGAAACAGAAGT GGAAGCTTGA
AA sequence Show only first row Show all	>Lus10020400 pacid=23144127 polypeptide=Lus10020400 locus=Lus10020400.g ID=Lus10020400.BGIv1.0 annot-version=v1.0 MAEQADVHNGGAEKAEVVVSFTAMKPQLFVEAPKANDAVEFYKAAFGAVETGRTTQPKRKADQELPQIISAQLQLAGTTILVSDHSDESAPAGTGLSLCL ETNDVDGAVSKAMGAGATSEGEIDESDGACCGGRVGKVKDPYGFVWLICSSSPAPKCGGGGGGETEVEA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48480			Lactoylglutathione lyase / gly...		Lus10020400 [exp]	0	1
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10025632 [exp]	8.2	0.7509
AT3G33520		SUF3, ESD1, ATA...	SUPPRESSOR OF FRI 3, EARLY IN ...		Lus10006654 [exp]	12.5	0.7599
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10011542 [exp]	25.9	0.7622
AT3G09000			proline-rich family protein (....		Lus10004824 [exp]	28.4	0.7818
AT1G29370			Kinase-related protein of unkn...		Lus10007339 [exp]	33.6	0.7642
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10025108 [exp]	38.2	0.7489
AT3G53320			unknown protein		Lus10019909 [exp]	48.8	0.7598
AT3G06960		TGD4, PDE320	TRIGALACTOSYLDIACYLGLYCEROL 4,...		Lus10022978 [exp]	82.8	0.6757
AT2G43980		ATITPK4	"inositol 1,3,4-trisphosphate ...		Lus10033768 [exp]	89.1	0.7150
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10009119 [exp]	93.2	0.6739

Compare expression of checked genes

Lus10020400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.