Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009581 [exp] 76 / 3e-19 ND / Lus10038232 [exp] 40 / 5e-05 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020401 pacid=23144189 polypeptide=Lus10020401 locus=Lus10020401.g ID=Lus10020401.BGIv1.0 annot-version=v1.0 ATGGCAACTTCCCAGGATGAGGCAGGGCAAGCAGAGAAGTCTATACAAGAGCTTTCAGGATCTGATCCAGTTGCAACTCATGAAGAACTAATCCATACTG AAGAGGAAGATGAAGCAATTGGTGTGAAGAATAATGATCAAGTAAATGAGAAGGGAGAGGAGGAGGATGAAGATGAGGAGTTGTGGCCGGCGGCAGAGCA CCATCAGTCCCCTGCTTCCGAGGAAGACACCAAGGAGGCCGCGGCAGTGACTGCTTTCGATGATGACGACGATGACGAGAAAGATGACGAAGAGGACATT GTTTGA
AA sequence Show only first row Show all	>Lus10020401 pacid=23144189 polypeptide=Lus10020401 locus=Lus10020401.g ID=Lus10020401.BGIv1.0 annot-version=v1.0 MATSQDEAGQAEKSIQELSGSDPVATHEELIHTEEEDEAIGVKNNDQVNEKGEEEDEDEELWPAAEHHQSPASEEDTKEAAAVTAFDDDDDDEKDDEEDI V

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10020401 [exp]	0	1
					Lus10009581 [exp]	1.0	0.9452
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10042005 [exp]	2.4	0.9329
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10026009 [exp]	2.8	0.9367
AT3G10910			RING/U-box superfamily protein...		Lus10029037 [exp]	3.9	0.9358
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Lus10013384 [exp]	6.6	0.9188
AT1G53540			HSP20-like chaperones superfam...		Lus10017202 [exp]	7.5	0.9349
AT1G29380			Carbohydrate-binding X8 domain...		Lus10004546 [exp]	7.7	0.9344
AT1G76430		PHT1;9	phosphate transporter 1;9 (.1)		Lus10025163 [exp]	8.9	0.9197
AT3G20650			mRNA capping enzyme family pro...		Lus10003803 [exp]	11.2	0.9231
AT1G09812			unknown protein		Lus10035787 [exp]	12.0	0.9130

Compare expression of checked genes

Lus10020401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.