Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48500 89 / 1e-22 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009584 [exp] 227 / 6e-77 AT5G48500 126 / 3e-37 unknown protein Lus10021984 [exp] 56 / 9e-10 AT5G18310 76 / 2e-17 unknown protein Lus10042520 [exp] 53 / 7e-09 AT5G18310 81 / 1e-19 unknown protein Lus10011841 [exp] 40 / 0.0004 AT3G07170 196 / 9e-61 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10022776 [exp] 39 / 0.0008 AT3G25070 155 / 4e-47 RPM1 interacting protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G250800 [exp] 111 / 1e-31 AT5G48500 100 / 2e-27 unknown protein Potri.019G029600 [exp] 65 / 2e-13 AT5G18310 94 / 2e-24 unknown protein Potri.013G052600 [exp] 61 / 6e-12 AT5G18310 97 / 8e-26 unknown protein Potri.015G040500 [exp] 45 / 8e-07 AT5G18310 59 / 2e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020403 pacid=23144082 polypeptide=Lus10020403 locus=Lus10020403.g ID=Lus10020403.BGIv1.0 annot-version=v1.0 ATGGAAGAGTACTATAACTACAACTATGGCGTAGGCGGAGGAGGACACGTGCCAGCGTTCGGGAGCTGGGACTGGAACAACGACCTCCCTTTCACTCAGT GCTTCGACTCCGCCCGACAACCGGCTGCCGCCGGTTTCCTCCGCTACAGCTACTCGTCGGAGGACAGGGATCTCTACCTCGCCGGAGATTTGTACCAGAA CGACGTCGTCGCTCCTGCTGTTTTCGTCGTCCCTCGCCGCACTAGGCAGGGGAAAGTGCAGAACAGAGAAGGCAAAACGACGAAGCAGCAGCAGAAGAAG GAAGTGAGCTACAACGACTGCGTATACGACGTCGTTAAGGAACCGCCGAGTCCTCCGCCGGCTCAGCCACGGCGGCGTATCCCGAAGCCGGTGGATGAAG ACTTGTACAAGATCCCGCCGGAGCTCCTCTGTTCACCCAACAAACCCAAAAAGAATAGAGCATTTGGGTTCGTCACGAGCTGCTTGCTGCCGACGTGCGT GGTCTGA
AA sequence Show only first row Show all	>Lus10020403 pacid=23144082 polypeptide=Lus10020403 locus=Lus10020403.g ID=Lus10020403.BGIv1.0 annot-version=v1.0 MEEYYNYNYGVGGGGHVPAFGSWDWNNDLPFTQCFDSARQPAAAGFLRYSYSSEDRDLYLAGDLYQNDVVAPAVFVVPRRTRQGKVQNREGKTTKQQQKK EVSYNDCVYDVVKEPPSPPPAQPRRRIPKPVDEDLYKIPPELLCSPNKPKKNRAFGFVTSCLLPTCVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48500			unknown protein		Lus10020403 [exp]	0	1
AT2G46980			unknown protein		Lus10009259 [exp]	4.7	0.8144
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10004809 [exp]	5.6	0.7364
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10023357 [exp]	5.7	0.8134
AT1G38065			O-fucosyltransferase family pr...		Lus10025631 [exp]	8.3	0.8110
AT1G16520			unknown protein		Lus10031193 [exp]	10.7	0.8000
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10012554 [exp]	11.7	0.7265
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10038449 [exp]	12.0	0.7973
AT3G53540			unknown protein		Lus10024434 [exp]	13.4	0.7727
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10042070 [exp]	21.2	0.7593
AT3G13980			unknown protein		Lus10008457 [exp]	23.9	0.7332

Compare expression of checked genes

Lus10020403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.