Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07440 305 / 5e-106 unknown protein AT5G48530 262 / 1e-89 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009585 [exp] 433 / 2e-156 AT3G07440 292 / 1e-100 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G250500 [exp] 337 / 2e-118 AT3G07440 313 / 6e-109 unknown protein Potri.007G083100 [exp] 45 / 1e-06 AT3G07440 55 / 7e-11 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020404 pacid=23144175 polypeptide=Lus10020404 locus=Lus10020404.g ID=Lus10020404.BGIv1.0 annot-version=v1.0 ATGACTTCACTTACGAGACGAATTCAGTGCTTAACCTCATGCCTCCGTTCCGCCGCCGTCGCCGGCATCCGTACGGTGAGAACGGACGCCGGACCACCCA GCAGGCGACGGAATAGAGCTCCCGCTTTCCAATCGAAGAAGGCGGAGGAGAAATCGGAGTGGTGGATAGTCGACGGAGAGATGCACGAAATCGGGGAGAA CGTGCCTCCACGGGAAAGGTTCGTGATTCCTAGAGATAACATCCCGAACAAGCGGCGGAAGCAGCTCAGGGAGCAGTTCATGCGGCGGACTCGCCTCGTT CTCAAGGATTCGGAGCACGAGCCTTGGTGTAGAAGGTACATGGAGCTCTATCAGGAGCTGAGAGAGAACTGGGAAAGGCTGTACTGGGATGAAGGTTTCT CGAAAAAGATTGCTCGAGAGCATGCCAATTACGAATCGGCGGAGGACGATGATCAGGACTTTAATCCATACAGGAGTAGGAGGACTGATTCAATGAAGGA AGGTGCTTCTGATAGAACCAGACAAGGCGATACATGGGGAAATGGCAACCAAGTTCGGGATAAATTTGACTACGACCGAGACAGAAGAATGAGGGAGAAA GCATTTGCACCGATGAATGGAGTGCGATCCCAAGACATGCCTCATTCTAGCTTGCGGAATCGGCCATTGGACTTTGTCGAAGAAACCAGATGA
AA sequence Show only first row Show all	>Lus10020404 pacid=23144175 polypeptide=Lus10020404 locus=Lus10020404.g ID=Lus10020404.BGIv1.0 annot-version=v1.0 MTSLTRRIQCLTSCLRSAAVAGIRTVRTDAGPPSRRRNRAPAFQSKKAEEKSEWWIVDGEMHEIGENVPPRERFVIPRDNIPNKRRKQLREQFMRRTRLV LKDSEHEPWCRRYMELYQELRENWERLYWDEGFSKKIAREHANYESAEDDDQDFNPYRSRRTDSMKEGASDRTRQGDTWGNGNQVRDKFDYDRDRRMREK AFAPMNGVRSQDMPHSSLRNRPLDFVEETR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07440			unknown protein		Lus10020404 [exp]	0	1
AT3G28970		AAR3	antiauxin-resistant 3, Domain ...		Lus10030685 [exp]	1.0	0.9534
AT1G68310		AE7	AS1/2 ENHANCER7, Protein of un...		Lus10031006 [exp]	2.0	0.9449
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10042674 [exp]	4.7	0.9358
AT2G44420			protein N-terminal asparagine ...		Lus10020880 [exp]	5.7	0.9521
AT5G03030			Chaperone DnaJ-domain superfam...		Lus10023494 [exp]	6.5	0.9343
AT1G12520		ATCCS, CCS1	copper chaperone for SOD1 (.1....		Lus10006686 [exp]	7.7	0.9342
AT1G11905			B-cell receptor-associated pro...		Lus10000048 [exp]	8.4	0.9415
AT2G26430		ATRCY1, RCY1	arginine-rich cyclin 1 (.1.2.3...		Lus10036509 [exp]	8.5	0.9293
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10038952 [exp]	8.7	0.9518
AT4G10330			glycine-rich protein (.1)		Lus10001357 [exp]	10.7	0.9400

Compare expression of checked genes

Lus10020404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.