Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27990 162 / 5e-50 ATYLMG1-2 YGGT family protein (.1) AT3G07430 155 / 6e-47 ATYLMG1-1, EMB1990 embryo defective 1990, YGGT family protein (.1) AT5G21920 68 / 1e-13 ATYLMG2 YGGT family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009586 [exp] 277 / 4e-95 AT4G27990 204 / 2e-66 YGGT family protein (.1) Lus10008993 [exp] 68 / 1e-13 AT5G21920 186 / 1e-58 YGGT family protein (.1.2) Lus10009622 [exp] 68 / 1e-13 AT5G21920 181 / 7e-57 YGGT family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G250200 [exp] 163 / 5e-50 AT4G27990 210 / 2e-68 YGGT family protein (.1) Potri.006G220400 [exp] 76 / 2e-16 AT5G21920 222 / 1e-72 YGGT family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02325 [flax] [poplar] YGGT YGGT family
Representative CDS sequence Show only first row Show all	>Lus10020405 pacid=23144126 polypeptide=Lus10020405 locus=Lus10020405.g ID=Lus10020405.BGIv1.0 annot-version=v1.0 ATGGCGCTGACGATCGCTTCCCAAGTCGGCGTCGTCCTCCAAGCTCCTCCTCTTAGCCACAGACGAATTCCCAGGAGATTTGCTACCGCCGCATCTCTTC CACTCTTCCGGAAACCGTCACTCTCGCTTCGAATCTCCACTCCGCAGCCAAGTTTTAGGGTTTCGGCTGCAGTATCCCCGACGACTCAATCACCACCTGT CGAGCCGCTGACCTCGCTCACCGGAGCGACGAGAACGGTGACGACGATCGTAACTCTAGCTTTCTCCGTGGCGCGACTGTTCTCGAATTCCCTCCTGAAG AAGCTTGCTCTGTTGCCGTCGCCGTTGGCCGCGATCGGAGCAGGTGCCGGCCCGCTCTTCTTCGCGGCAATGGATAGCCGTCCTAGTCCGTATTTGAACA CGCCGTTGACGGTGGTTGCAGCCGGATTGGCCAAGTGGTTGGACATCTACAGTGGCGTCCTGATGGTTAGGGTTTTGCTCAGTTGGTTCCCGAACATTCC CTGGGATCGACAGCCGTTGTCAGCTATTAGGGACCTATGTGATCCTTATCTGAGCTTGTTTAGGAATATAATTCCTCCGGTTTTCAATACTCTGGATGTG AGTCCTCTGCTGGCCTTTGCTATTCTGGGGTTGCTTGGTTCTATTCTCAAAAGCAGTTAA
AA sequence Show only first row Show all	>Lus10020405 pacid=23144126 polypeptide=Lus10020405 locus=Lus10020405.g ID=Lus10020405.BGIv1.0 annot-version=v1.0 MALTIASQVGVVLQAPPLSHRRIPRRFATAASLPLFRKPSLSLRISTPQPSFRVSAAVSPTTQSPPVEPLTSLTGATRTVTTIVTLAFSVARLFSNSLLK KLALLPSPLAAIGAGAGPLFFAAMDSRPSPYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCDPYLSLFRNIIPPVFNTLDV SPLLAFAILGLLGSILKSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27990		ATYLMG1-2	YGGT family protein (.1)		Lus10020405 [exp]	0	1
AT4G11175			Nucleic acid-binding, OB-fold-...		Lus10035773 [exp]	1.7	0.9413
AT4G11175			Nucleic acid-binding, OB-fold-...		Lus10037352 [exp]	2.0	0.9392
AT4G27990		ATYLMG1-2	YGGT family protein (.1)		Lus10009586 [exp]	2.4	0.9324
AT3G43720			Bifunctional inhibitor/lipid-t...		Lus10008400 [exp]	2.4	0.9164
AT1G49970		SVR2, NCLPP5, C...	SUPPRESSOR OF VARIEGATION 2, N...		Lus10003953 [exp]	3.0	0.9071
AT1G21600		PTAC6	plastid transcriptionally acti...		Lus10018866 [exp]	4.9	0.9282
AT2G14880			SWIB/MDM2 domain superfamily p...		Lus10013893 [exp]	5.0	0.9208
AT4G17040		HON5, CLPR4	happy on norflurazon 5, CLP pr...		Lus10011014 [exp]	5.3	0.9151
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10028683 [exp]	9.9	0.8998
AT4G28590		MRL7	Mesophyll-cell RNAi Library li...		Lus10024925 [exp]	11.0	0.8732

Compare expression of checked genes

Lus10020405 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.