Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25400 151 / 6e-48 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009588 [exp] 201 / 9e-68 AT3G25400 177 / 5e-58 unknown protein Lus10003475 [exp] 136 / 4e-42 AT3G25400 164 / 3e-53 unknown protein Lus10015730 [exp] 126 / 4e-38 AT3G25400 157 / 1e-50 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G250000 [exp] 172 / 1e-56 AT3G25400 151 / 3e-48 unknown protein Potri.002G235000 [exp] 159 / 3e-51 AT3G25400 134 / 5e-41 unknown protein Potri.014G148200 [exp] 158 / 1e-50 AT3G25400 175 / 2e-57 unknown protein Potri.010G069700 [exp] 136 / 2e-42 AT3G25400 166 / 4e-54 unknown protein Potri.008G168700 [exp] 135 / 4e-42 AT3G25400 170 / 9e-56 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0231 [flax] [poplar] MazG PF03819 [flax] [poplar] MazG MazG nucleotide pyrophosphohydrolase domain
Representative CDS sequence Show only first row Show all	>Lus10020407 pacid=23144203 polypeptide=Lus10020407 locus=Lus10020407.g ID=Lus10020407.BGIv1.0 annot-version=v1.0 ATGACGGAGGCAGACTCTTCCAGCGGCGGCGGAGAAGTGGTGTCCCTCGATCTGCTGAAGAACAAGATGGCGGAATTCGCCAAAGAACGCAACTGGGATC GCTTCCACAGCCCCAGAAACCTTCTCCTAGCTCTGGTAGGGGAAGTGGGTGAACTATCAGAGATATTCCAGTGGAAAGGAGAGGTGCCAAAGGGGCTCCC AGACTGGGAACAAGAAGAGAAAACCCACTTGGGTGAAGAACTCTCAGACGTTTTACTCTACCTTGTGAGGCTCTCTGATATATGTGGGATTGACCTTGGT AAAGCTGCTCTGCGTAAGCTGCAGCTTAACGCCATTAAGTACCCTGCTGCTGCAGTTTCCAACACCAGTAATAATAGTGGCAGCAGCAGCGGCAAAAGTG AAGAAGTAGAGTTGCAGAAATGA
AA sequence Show only first row Show all	>Lus10020407 pacid=23144203 polypeptide=Lus10020407 locus=Lus10020407.g ID=Lus10020407.BGIv1.0 annot-version=v1.0 MTEADSSSGGGEVVSLDLLKNKMAEFAKERNWDRFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWEQEEKTHLGEELSDVLLYLVRLSDICGIDLG KAALRKLQLNAIKYPAAAVSNTSNNSGSSSGKSEEVELQK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25400			unknown protein		Lus10020407 [exp]	0	1
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10028501 [exp]	8.4	0.8736
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10029180 [exp]	13.8	0.8650
AT5G53110			RING/U-box superfamily protein...		Lus10032382 [exp]	16.0	0.9043
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10028502 [exp]	17.2	0.8732
AT2G14095			unknown protein		Lus10025500 [exp]	17.5	0.8885
					Lus10037168 [exp]	27.3	0.8424
AT5G38760			Late embryogenesis abundant pr...		Lus10003046 [exp]	29.5	0.8768
AT1G57610			Protein of unknown function (D...		Lus10034435 [exp]	40.1	0.8765
AT5G57280		RID2	root initiation defective 2, S...		Lus10015533 [exp]	45.2	0.8263
AT5G15240			Transmembrane amino acid trans...		Lus10030683 [exp]	59.9	0.8026

Compare expression of checked genes

Lus10020407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.