Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12970 89 / 6e-24 EPFL9, STOMAGEN stomagen (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009589 [exp] 155 / 2e-50 AT4G12970 87 / 3e-24 stomagen (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G249901 [exp] 94 / 8e-26 AT4G12970 103 / 6e-30 stomagen (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020408 pacid=23144113 polypeptide=Lus10020408 locus=Lus10020408.g ID=Lus10020408.BGIv1.0 annot-version=v1.0 ATGGCTTCTGCTACTTCCATTCAACTGTACCATTCATTCTTCTTATTACTCTTCTTCTTCTTCTTCTCTGCTGCTGTCCTTGATTCCTCAGCTTCTGCCA CCCTTCAAGGACTCATAAGTCATCATGGCCATGATGTGAAGAACCCTGCAATGCCACAACACAAGCTTCACTCATCCAAGGAGTATGAGAAGAGTGAAGA AGGGACCGTAATCAAAGGAAGAAGCTATGGGAGGAGGCTTCTGATAGGGTCAATGGCTCCAATATGTACATACAATGAATGCAGAGGATGCAAGTTGTAC ACCAAGAAGTGTTGGGCAGAGCAAGTCCCTGTTGAAGGCAATGACCCTATCAACAGTGCTTATCACTACAAATGTGTTTGCCATAGGTGA
AA sequence Show only first row Show all	>Lus10020408 pacid=23144113 polypeptide=Lus10020408 locus=Lus10020408.g ID=Lus10020408.BGIv1.0 annot-version=v1.0 MASATSIQLYHSFFLLLFFFFFSAAVLDSSASATLQGLISHHGHDVKNPAMPQHKLHSSKEYEKSEEGTVIKGRSYGRRLLIGSMAPICTYNECRGCKLY TKKCWAEQVPVEGNDPINSAYHYKCVCHR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12970		EPFL9, STOMAGEN	stomagen (.1)		Lus10020408 [exp]	0	1
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10011058 [exp]	4.1	0.8827
AT2G28780			unknown protein		Lus10024409 [exp]	4.9	0.8812
AT5G02750		SGR9	SHOOT GRAVITROPISM 9, RING/U-b...		Lus10003992 [exp]	6.0	0.8738
AT3G43660			Vacuolar iron transporter (VIT...		Lus10025685 [exp]	7.9	0.8809
AT2G39210			Major facilitator superfamily ...		Lus10014640 [exp]	10.2	0.8093
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10025200 [exp]	10.7	0.8559
AT4G21500			unknown protein		Lus10011256 [exp]	12.0	0.8405
AT2G02240		MEE66	maternal effect embryo arrest ...		Lus10018171 [exp]	14.0	0.8376
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Lus10000963 [exp]	14.1	0.8327
AT4G33840			Glycosyl hydrolase family 10 p...		Lus10014642 [exp]	14.4	0.8444

Compare expression of checked genes

Lus10020408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.