Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07400 1216 / 0 lipase class 3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009590 [exp] 1623 / 0 AT3G07400 1060 / 0.0 lipase class 3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G249400 [exp] 1373 / 0 AT3G07400 1235 / 0.0 lipase class 3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10020409 pacid=23144044 polypeptide=Lus10020409 locus=Lus10020409.g ID=Lus10020409.BGIv1.0 annot-version=v1.0 ATGGAGTTCATACAGCGGCGAGTGGAGTCATGGATCAGCGACCAGAAGGCGAGGATCTTCAAGGTGTCGTGGGGCCCGCTCCACTGGAGGATGAAGTGGC CTCCGTGGATCAACGGCGACAACAGGGAGCAGAGGAAGCGGATTCACCAGGAGTACGAGCGGCGGAAGCGGCAGCTCCACGATCTCTGCCTCGCTGTCAA GGCCGACTCCGTCGCCGACTTGCAGGATATCCTCTGTTGCATGGTCCTCGCTGAGTGCGTATACAAGGTATTGGAGAGGAATTGGCTGATGGGTTTATCG TGTAGTATAGGAAGATTGCGGATGATGGTTTTCTACTGCTATATCAACAGAACTGTACTGCTAGGCTTCAATAGACCTGCTGCTGAAATGGTTCGAGCTG TGAACAAGTTTAAGGCAGATTTTGGAGGACAAGTTGTTTCTCTAGAACGTGTCCAACCCTCTTCAGATCACGTCCCTCACAGGTACCTGCTAGCTGAAAC AAGTGATACCTTGTTTGCTTCCTTTATTGGTACAAAGCAGTACAAGGATTTGATAGCTGATGTAAACATCCTGCAAGGTGCCATATTTCAAGATGATGCC TCAACAGTAGCTGCTGATTCTAGTATAGGAGAACCTTCAAAAGCTAATGGAGAACGTGACAAAATAACGGTTGAGTCAAAACCCAAATCAGTTAAAGATC AACCAAAGCCTGCTGCCCATAGAGGATTCTTGGCTCGTGCTAAGGGCATACCTGCTCTAGAGCTGTACAAGCTAGCCCAGAAGAAGAATCAGAAGCTTGT TCTATGTGGACATTCTCTTGGTGGAGCTGTTGCAGCCCTAGCTACCCTTGCTATTCTGAGAGTTGTTGCTGCGGCATCTTCATCAAAAGAGCATGAAAAA GTTCCGGTTAAATGCATAACATTTTCCCAACCGCCAGTTGGGAATGCTGCTTTAAGAGATTATGTCCATGGAAATGGTTGGCAGCACCATTTCAAGACTT ACTGCATTCCTGAAGATTTAGTGCCTCGTTTCCTCTCTCCTGCTTACTTTGATCATTATAATGCACAGTCTTCATCGGGGCGTTCTGAGGTTGATGCAAC TGGTCAACCTGTTATTAATCCAGAAGAAGGAATAGAAAAATCAAAGGAACAAGGGCAAAGAGAAAAGAAGGGAGAGCAGCTCGTAATTGGTTTAGGCCCT GTGCAAACTTCCTTTTGGAGACTTTCAAGGCTTGTTCCCATAGAGGGTATTAGAAGGCAATTTACTAAGTTTACTGGAAAGCCAGTTGATCTTTTAGAGA CGTCTGAGGCCCCTAGTTCAACTTTGACCTCTTCAATTGAAGATGCAATAATTGAACCACAGTCTCTTGAAATCCAAGAGAATTCTGATGGCATATCACT TAAACCATTACCTGATGTTAACAATGGGAAACAAGATGAAACTGGGGCTGAAAAGTTCTCCGAAAAGGCTGGCACCAAAGGCGGAGACAGAAGTACCTGG CAGAGGGTACCTTACCTACCTTCATATGTTCCATTTGGCGAGCTGTATCTGTTGGAAAATTCTTCAGTCGAATTACTATCTGGTGCAGAGTACTCACAAT TGACGTCGGTCAAACCTGTTTTTGAGCAACTAAAGGAACGACTTCATTCACATTCAATGAGGGCTTATAGGTCACGATTTCAAAGAATCTATGACTTGTG CATGGGCGATGCTGGCTCATCTTTCCCAGGGATGGAGCAACTTCAACAGTTTCCACATTTACAACAATGGCTTGGACTTACAGCTGCAGGTACCGTGGAG CTTTCTCAGATTGTGGAGTCTCCTGTTGTTCGCACAGCTACTTCAATTGTTCCCCTTGGATGGAGTGGTACTCCTGGTGAGAAAAATGGGGAACCCCTGA AAGTTGATATCACGGGTTACGGATTGCACCTTTGTAACTTGGTTCATGCTCAAGTGAACGGTACCTGGTGTTCAACTACTGTAGAGTCATTCCCGTCAGC ACCCAGCTATCCTCCAGCTGAAGGAAAACAGCCAGAACTACAAAAGATAAGGGTCTTGGTTGGAGCTCCGTTGAAAAGGTCACCTATAGTGGCGGACTCT TCAATGCCTCTTTTCTCATCGATTAATCCCGATGTTGCCAACCTCAGCGGCGAGCATAGTTTTAGGCACCAGGAAAACGGCCTGCGTCCAGAAGAGTTGC GTGAGTTTTGCATCTTCTGTATGAGCGATTTCATTACTGTTGCAAAGGAGGTTCATGTCAGAACACGCAGAGTTCGATTACTTGGCCTTGAGGGTGCTGG GAAGACGTCGCTCTTCAAGGCAATAATGGACAAAGGTAGACCGACTGCTATAACGAATGCGGACAACATGTTTACGGAGGCTGATGTTCAAGAAGCAATT GCTGGTGGCATATGCTACTGTGATTCATCTAGTGTGAATTTGCAGGATCTGAATACAGAGGTCTCACGATTCAGGGACGAACTATGGACAGGAATTCGCG ACCTCAGCAGGAAAATAGACTTGATAGTTCTTGTACACAACTTATCCCACAAGATTCCCAGATATAACAACCCAAACACAACGCAGCAGCCAGTCCTCGC ATTTTTATTAGACGAGGCAAAGGCGTTGGGGATTCCGTGGGTCCTCGCAATAACGAACAAATTCTCGGTCAGCGCTCACCAACAGAAGGCGGCAATCGAG GCCGTCCTGCAGGCCTATCAAGCCTCTCCCAGCACGACAGAAGTCGTCAATTCGTGTCCTTATGTGCTGTCCGGTTCTGGCGGAAACTCTACTCTCCCCT GGGCCGCAATTGGCGGAGACTCCGGAGGGAACTCGTCCGCTAAGAGGCCGTTCTTCTCTCCGCTCGATCTCGCTCGTAGGCCGTTTCAGAGACGAGACAC GATTATCCCTGTCGATGGCTTGAACTCACTCTGTCAGCTTGTCCATCGCGTGCTTCGAAGCACCGAAGAGGTGGCCCTTGAGGAGCTGGCTCGAGACAGG CTTCTGGCAGAGCTGGTGCGAGAGCAACAGGCATTGGGTGGGAATCGAGAATCGCAGTCGAAGGAGTCCTCGATGACAGCAGCCGCGGTGGGTGCCTCCA TCGGGGCCGGTCTTGGCTTGGTGTTGGCTGTAGTTATGGGGGCAGCATCTGCTCTCCGTAAGCCTTAG
AA sequence Show only first row Show all	>Lus10020409 pacid=23144044 polypeptide=Lus10020409 locus=Lus10020409.g ID=Lus10020409.BGIv1.0 annot-version=v1.0 MEFIQRRVESWISDQKARIFKVSWGPLHWRMKWPPWINGDNREQRKRIHQEYERRKRQLHDLCLAVKADSVADLQDILCCMVLAECVYKVLERNWLMGLS CSIGRLRMMVFYCYINRTVLLGFNRPAAEMVRAVNKFKADFGGQVVSLERVQPSSDHVPHRYLLAETSDTLFASFIGTKQYKDLIADVNILQGAIFQDDA STVAADSSIGEPSKANGERDKITVESKPKSVKDQPKPAAHRGFLARAKGIPALELYKLAQKKNQKLVLCGHSLGGAVAALATLAILRVVAAASSSKEHEK VPVKCITFSQPPVGNAALRDYVHGNGWQHHFKTYCIPEDLVPRFLSPAYFDHYNAQSSSGRSEVDATGQPVINPEEGIEKSKEQGQREKKGEQLVIGLGP VQTSFWRLSRLVPIEGIRRQFTKFTGKPVDLLETSEAPSSTLTSSIEDAIIEPQSLEIQENSDGISLKPLPDVNNGKQDETGAEKFSEKAGTKGGDRSTW QRVPYLPSYVPFGELYLLENSSVELLSGAEYSQLTSVKPVFEQLKERLHSHSMRAYRSRFQRIYDLCMGDAGSSFPGMEQLQQFPHLQQWLGLTAAGTVE LSQIVESPVVRTATSIVPLGWSGTPGEKNGEPLKVDITGYGLHLCNLVHAQVNGTWCSTTVESFPSAPSYPPAEGKQPELQKIRVLVGAPLKRSPIVADS SMPLFSSINPDVANLSGEHSFRHQENGLRPEELREFCIFCMSDFITVAKEVHVRTRRVRLLGLEGAGKTSLFKAIMDKGRPTAITNADNMFTEADVQEAI AGGICYCDSSSVNLQDLNTEVSRFRDELWTGIRDLSRKIDLIVLVHNLSHKIPRYNNPNTTQQPVLAFLLDEAKALGIPWVLAITNKFSVSAHQQKAAIE AVLQAYQASPSTTEVVNSCPYVLSGSGGNSTLPWAAIGGDSGGNSSAKRPFFSPLDLARRPFQRRDTIIPVDGLNSLCQLVHRVLRSTEEVALEELARDR LLAELVREQQALGGNRESQSKESSMTAAAVGASIGAGLGLVLAVVMGAASALRKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07400			lipase class 3 family protein ...		Lus10020409 [exp]	0	1
AT3G07400			lipase class 3 family protein ...		Lus10009590 [exp]	1.7	0.8629
AT4G39420			unknown protein		Lus10006813 [exp]	9.5	0.8555
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10033597 [exp]	11.2	0.8056
AT1G30010			Intron maturase, type II famil...		Lus10042828 [exp]	12.7	0.8504
AT4G24560		UBP16	ubiquitin-specific protease 16...		Lus10009273 [exp]	13.0	0.8154
AT1G79730		ELF7	EARLY FLOWERING 7, hydroxyprol...		Lus10037558 [exp]	14.0	0.8495
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10017884 [exp]	21.8	0.7911
AT4G15240			Protein of unknown function (D...		Lus10027152 [exp]	23.6	0.7973
AT1G29880			glycyl-tRNA synthetase / glyci...		Lus10042096 [exp]	27.6	0.7440
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10001951 [exp]	28.7	0.7585

Compare expression of checked genes

Lus10020409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.