Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25250 278 / 1e-88 AtOXI1, OXI1, AGC2-1 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT4G13000 276 / 1e-88 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT1G51170 182 / 5e-52 Protein kinase superfamily protein (.1) AT3G20830 179 / 5e-51 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT2G36350 171 / 1e-45 Protein kinase superfamily protein (.1) AT3G52890 169 / 7e-45 KIPK KCBP-interacting protein kinase (.1.2) AT5G03640 161 / 3e-42 Protein kinase superfamily protein (.1) AT5G58140 157 / 6e-41 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT5G47750 149 / 7e-39 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT1G53700 145 / 3e-38 PK3AT, WAG1 PROTEIN KINASE 3 ARABIDOPSIS THALIANA, WAG 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009592 [exp] 475 / 2e-165 AT3G25250 429 / 7e-149 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10025882 [exp] 353 / 2e-117 AT3G25250 434 / 2e-150 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10038221 [exp] 352 / 7e-117 AT3G25250 434 / 1e-150 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10031830 [exp] 178 / 1e-50 AT3G20830 416 / 1e-144 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10035591 [exp] 162 / 3e-42 AT2G36350 746 / 0.0 Protein kinase superfamily protein (.1) Lus10008634 [exp] 156 / 1e-40 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Lus10001604 [exp] 155 / 3e-40 AT5G58140 1218 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10026572 [exp] 155 / 4e-40 AT5G58140 1290 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10036150 [exp] 143 / 1e-37 AT2G34650 521 / 0.0 PINOID, ABRUPTUS, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G248900 [exp] 290 / 3e-93 AT3G25250 419 / 7e-145 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.001G018300 [exp] 185 / 5e-53 AT3G20830 469 / 8e-165 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.006G114900 [exp] 171 / 1e-45 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Potri.009G146700 [exp] 162 / 1e-42 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1) Potri.004G209700 [exp] 159 / 2e-41 AT5G58140 1332 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.001G435900 [exp] 152 / 3e-40 AT1G53700 475 / 4e-165 PROTEIN KINASE 3 ARABIDOPSIS THALIANA, WAG 1 (.1) Potri.006G003800 [exp] 148 / 2e-38 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.001G342000 [exp] 149 / 4e-38 AT3G45780 1388 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Potri.016G004900 [exp] 147 / 4e-38 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.008G024000 [exp] 144 / 7e-38 AT3G44610 487 / 1e-170 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10020411 pacid=23144051 polypeptide=Lus10020411 locus=Lus10020411.g ID=Lus10020411.BGIv1.0 annot-version=v1.0 ATGAACGACGGCGGCTACAGCGGAACTGTCGTCCCGATCCTCGACCTCGACGAGCTCAGCGTCGTCTCCCCCGTCGGCCGCGGCGCTAAAGGAGTCGCGT TCCTCGTCAGAAACCACCACTTCAACGAGTCATGGGCTCTCAAGGTCGTCCTCCGCGATTTCGTCGAAAAGAAACAGAGCTCCCCCGCCGCCGCAGGCGA CACCTCCACCACCGATCATCATTACAAGAGGATCTGGTTCGAACAGCGGGTTCTGAGCCGGTTCAAACACCCGCTCCTGCCCCGACTCCGTGGCATTCTC TCCACCGATAAGATCGTCGCGTACGCCATTGATTACTGCCCCGGCAAGGATCTAAACCGCCTCCGGAAGATACAGAGCGAGCAAACCTTCTCTCCGGTCA TCATCAGGTTCTATGCGGCGGAATTGGTTCTGGCGTTGGAGTATTTACACAGCTTAGGGATCGCTTACCGAGATTTGAAACCGGAGAACATTCTGATTCA AGAGAGCGGCCACATAATGCTAGTCGATTTCGACCTCTCCACTGAACTGTCACCTCCTTCTCCGTCATCGGTGAAGAACAAAATGATGAAGAAGACGAAG AACAATCCCGTGCCTAGGTCGAGATCCATGCGGCGGAAGCGCTCGTTAAGCTTACAGTTCCTCTGCGGCGGTGGCTGCTCGACGGACGAATCCGATCGCG GTCCCGCTCCCATACTCCAGCGGTCGAAATCCATGATGAAGACGACAGCAGCGACGGAGGGTAAATCGAACTCGTTCGTCGGAACGGAAGAATACGTGGC GCCGGAGGTGATCCAGGGGTACGGCCACGACTTCTCCGTTGACTGGTGGTCGCTAGGGGTGGTGATGTACGAGATGCTCTACGGAAGGACACCGTTCCGA GGGGCGAATCGGAAGGAGACTTTCTGCGGCGGTGGCTGCTCGACGGACGAATCCGATCGCGGTCCCGCTCCCATACTCCAGCGGTCGAAATCCATGATGA AGACGACAGCAGCGACGGAGGGTAAATCGAACTCGTTCGTCGGAACGGAAGAATACGTGGCGCCGGAGGTGATCCAGGGGTACGGCCACGACTTCTCCGT TGACTGGTGGTCGCTAGGGGTGGTGATGACACCGTTCCGAGGGGCGAATCGGAAGGAGACTTTCTTCAGGATCCTGACGATGTCGCCGGATCTCGGCGGG GAAGCCACGCCGCTGCGGGATCTAATCAGGGAGCTTCTAGTGAAGGATCCGAGGAGGAGGATAACGGTGGAGGAGATCAAGAGTCATGCGTTCTTCGAGG GATTGAATTGGGATTCGGTGGTGGAAGTGTCGCGGCCGCCGTATATTCCGGCGAAGGAAGATGGAGGGAGTGCGAATAAGAGCATCGACGTGGAGGCTTT TGTAGAGAGAGTTTTTAGCGTAGGCAGAGGCGGCGATAGAGTAGCCGCCGGCGGAAATGAGGAAGAGGTGGCGGGAAATCAGGGAGATGAGAAACAAACT ACTCACTCTAAACAGAATTTTGTGGTTTTCTGA
AA sequence Show only first row Show all	>Lus10020411 pacid=23144051 polypeptide=Lus10020411 locus=Lus10020411.g ID=Lus10020411.BGIv1.0 annot-version=v1.0 MNDGGYSGTVVPILDLDELSVVSPVGRGAKGVAFLVRNHHFNESWALKVVLRDFVEKKQSSPAAAGDTSTTDHHYKRIWFEQRVLSRFKHPLLPRLRGIL STDKIVAYAIDYCPGKDLNRLRKIQSEQTFSPVIIRFYAAELVLALEYLHSLGIAYRDLKPENILIQESGHIMLVDFDLSTELSPPSPSSVKNKMMKKTK NNPVPRSRSMRRKRSLSLQFLCGGGCSTDESDRGPAPILQRSKSMMKTTAATEGKSNSFVGTEEYVAPEVIQGYGHDFSVDWWSLGVVMYEMLYGRTPFR GANRKETFCGGGCSTDESDRGPAPILQRSKSMMKTTAATEGKSNSFVGTEEYVAPEVIQGYGHDFSVDWWSLGVVMTPFRGANRKETFFRILTMSPDLGG EATPLRDLIRELLVKDPRRRITVEEIKSHAFFEGLNWDSVVEVSRPPYIPAKEDGGSANKSIDVEAFVERVFSVGRGGDRVAAGGNEEEVAGNQGDEKQT THSKQNFVVF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10020411 [exp]	0	1
AT5G58950			Protein kinase superfamily pro...		Lus10015314 [exp]	2.6	0.8166
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10010728 [exp]	3.9	0.7820
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10016960 [exp]	8.1	0.8114
AT2G21100			Disease resistance-responsive ...		Lus10034482 [exp]	10.2	0.7726
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10008828 [exp]	15.3	0.7718
AT2G16890			UDP-Glycosyltransferase superf...		Lus10022221 [exp]	17.7	0.7551
AT3G16510			Calcium-dependent lipid-bindin...		Lus10006523 [exp]	20.0	0.7488
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035330 [exp]	28.0	0.7319
AT4G04960			Concanavalin A-like lectin pro...		Lus10015313 [exp]	28.7	0.7523
AT2G38970			Zinc finger (C3HC4-type RING f...		Lus10023527 [exp]	31.3	0.7415

Compare expression of checked genes

Lus10020411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.