Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07370 334 / 8e-116 ATCHIP, CHIP carboxyl terminus of HSC70-interacting protein (.1) AT2G45920 62 / 1e-10 U-box domain-containing protein (.1) AT3G11840 55 / 3e-08 PUB24 plant U-box 24 (.1) AT1G71020 54 / 6e-08 ARM repeat superfamily protein (.1.2) AT3G61390 52 / 3e-07 RING/U-box superfamily protein (.1.2) AT1G01660 51 / 4e-07 RING/U-box superfamily protein (.1) AT5G37490 50 / 8e-07 ARM repeat superfamily protein (.1) AT3G52450 50 / 8e-07 PUB22 plant U-box 22 (.1) AT1G01670 49 / 2e-06 RING/U-box superfamily protein (.1) AT1G27910 49 / 3e-06 ATPUB45 ARABIDOPSIS THALIANA PLANT U-BOX 45, plant U-box 45 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009593 [exp] 532 / 0 AT3G07370 356 / 2e-124 carboxyl terminus of HSC70-interacting protein (.1) Lus10025884 [exp] 418 / 6e-149 AT3G07370 375 / 5e-132 carboxyl terminus of HSC70-interacting protein (.1) Lus10038219 [exp] 413 / 5e-147 AT3G07370 372 / 6e-131 carboxyl terminus of HSC70-interacting protein (.1) Lus10034113 [exp] 59 / 1e-09 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10043471 [exp] 57 / 4e-09 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10001079 [exp] 54 / 7e-08 AT5G37490 290 / 1e-93 ARM repeat superfamily protein (.1) Lus10040124 [exp] 52 / 8e-08 AT1G66160 154 / 6e-45 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) Lus10007317 [exp] 54 / 1e-07 AT1G29340 899 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Lus10007511 [exp] 52 / 2e-07 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G248700 [exp] 374 / 3e-131 AT3G07370 387 / 7e-137 carboxyl terminus of HSC70-interacting protein (.1) Potri.004G083900 [exp] 55 / 2e-08 AT5G37490 354 / 8e-119 ARM repeat superfamily protein (.1) Potri.017G135000 [exp] 54 / 5e-08 AT5G37490 375 / 4e-127 ARM repeat superfamily protein (.1) Potri.007G051000 [exp] 54 / 6e-08 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.011G071400 [exp] 54 / 7e-08 AT1G29340 888 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.001G216300 [exp] 53 / 8e-08 AT3G11840 303 / 6e-99 plant U-box 24 (.1) Potri.010G113900 [exp] 53 / 1e-07 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.004G028800 [exp] 52 / 2e-07 AT4G21350 379 / 8e-131 plant U-box 8 (.1) Potri.014G101100 [exp] 51 / 4e-07 AT2G35930 266 / 3e-85 plant U-box 23 (.1) Potri.005G144700 [exp] 50 / 7e-07 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10020412 pacid=23144099 polypeptide=Lus10020412 locus=Lus10020412.g ID=Lus10020412.BGIv1.0 annot-version=v1.0 ATGGGGCAAGGATTGATACTGACGCCGGCGAAGCAAGCCGAGAAGTTGAAGGAAGACGGGAACTTGTACTTCAAGAAGGATCGATTAGCAGCCGCAATCG ACGCTTACACTGAGGCGATTGCGCTGTGCCCTAATGTGCCTGTGTACTGGACCAATCGCGCTGTTTGTCATCGGAAACGCAACAACTGGAAGAAGGTTGA AGAGGATTGCCGTTCTGCTATCAAGCTTGATCACAGTTCTTTCAAGGCTCACTATATGCTGGGACTTGCATTGCTAAAGAGGGAAGAGTATTCTGAGGGA ATCAAGGCATTGGAAAGGGCACTGGATCTTGGCAGGGGCCCAAATCAATCAAGCCTATTGGTGGAGGAGATCTGGCAAGAGCTTGCGAAAGCAAAGTACT TGATATGGGAGCAAGCATCTACACAACGTTCCTGGGAGATGCAGAATCTCAAACAAGCTTGTGTGAGCGCTCTCAAAGAGAAATACTTCCTCGATGATCC TCAGGGTGAAATGACCTCAGTCTCAAATGAGGCTAATGATCTGCAGTTGGAGGAGCTGGAGGAAGTGTTTTACAAGGCAGCAGAAGACGACATGCCTACA GATGTACCGGATTACCTTTGCTGCAGAATCTCCCTTGATATCTTCCGTGACCCAGTCATCACACCAAGCGGTGTGACTTACGAACGAGGAGTCATTCTTG AACATCTCCAGAAGGTGGGGAAGTTCGATCCGATCACCCGGGAGCCACTCGAGCAGTTTCAGTTGATCCAGAACCTGGCGATAAAGGAAGCGGTCCAGTC ATACCTTCAGAAGCATGGTTGGGCGTACAGAACAGGTGAAGAGTGA
AA sequence Show only first row Show all	>Lus10020412 pacid=23144099 polypeptide=Lus10020412 locus=Lus10020412.g ID=Lus10020412.BGIv1.0 annot-version=v1.0 MGQGLILTPAKQAEKLKEDGNLYFKKDRLAAAIDAYTEAIALCPNVPVYWTNRAVCHRKRNNWKKVEEDCRSAIKLDHSSFKAHYMLGLALLKREEYSEG IKALERALDLGRGPNQSSLLVEEIWQELAKAKYLIWEQASTQRSWEMQNLKQACVSALKEKYFLDDPQGEMTSVSNEANDLQLEELEEVFYKAAEDDMPT DVPDYLCCRISLDIFRDPVITPSGVTYERGVILEHLQKVGKFDPITREPLEQFQLIQNLAIKEAVQSYLQKHGWAYRTGEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Lus10020412 [exp]	0	1
AT1G45976		SBP1	S-ribonuclease binding protein...		Lus10001131 [exp]	2.6	0.8537
AT3G24060			Plant self-incompatibility pro...		Lus10023675 [exp]	16.2	0.7856
AT1G63855			Putative methyltransferase fam...		Lus10041869 [exp]	25.6	0.8039
AT4G16510			YbaK/aminoacyl-tRNA synthetase...		Lus10000734 [exp]	47.1	0.7418
AT5G25360			unknown protein		Lus10005466 [exp]	54.3	0.7409
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10001813 [exp]	56.1	0.7463
AT5G47890			NADH-ubiquinone oxidoreductase...		Lus10040122 [exp]	92.7	0.7455
AT1G72175			RING/U-box protein with domain...		Lus10009529 [exp]	94.3	0.7403
AT1G12580		PEPKR1	phosphoenolpyruvate carboxylas...		Lus10015009 [exp]	110.6	0.7473
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Lus10018609 [exp]	130.1	0.7321

Compare expression of checked genes

Lus10020412 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.