Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07360 461 / 7e-160 ATPUB9 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) AT5G18320 290 / 4e-93 ARM repeat superfamily protein (.1) AT3G46510 259 / 2e-79 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT1G71020 251 / 4e-78 ARM repeat superfamily protein (.1.2) AT3G54850 254 / 1e-77 ATPUB14 plant U-box 14 (.1) AT1G23030 246 / 7e-75 PUB11 ARM repeat superfamily protein (.1) AT2G28830 252 / 1e-74 AtPUB12 PLANT U-BOX 12 (.1) AT5G18330 222 / 2e-67 ARM repeat superfamily protein (.1) AT5G18340 205 / 1e-60 ARM repeat superfamily protein (.1) AT5G42340 192 / 5e-54 PUB15 Plant U-Box 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009594 [exp] 821 / 0 AT3G07360 482 / 2e-168 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Lus10025885 [exp] 547 / 0 AT3G07360 499 / 2e-175 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Lus10038218 [exp] 540 / 0 AT3G07360 489 / 2e-171 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Lus10043471 [exp] 269 / 5e-83 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10016565 [exp] 263 / 2e-80 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 260 / 3e-79 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10034113 [exp] 267 / 2e-78 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10037970 [exp] 256 / 4e-78 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10016016 [exp] 202 / 1e-57 AT5G42340 702 / 0.0 Plant U-Box 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G248600 [exp] 513 / 2e-180 AT3G07360 573 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.019G029500 [exp] 488 / 1e-170 AT3G07360 495 / 6e-174 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.013G052500 [exp] 421 / 2e-144 AT3G07360 415 / 3e-142 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.013G052200 [exp] 398 / 1e-134 AT3G07360 408 / 1e-138 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.010G113900 [exp] 270 / 1e-83 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.009G029600 [exp] 268 / 2e-82 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G035700 [exp] 267 / 2e-82 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.001G238500 [exp] 267 / 4e-82 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G128600 [exp] 262 / 1e-80 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.010G226500 [exp] 252 / 9e-77 AT3G54850 806 / 0.0 plant U-box 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10020413 pacid=23144121 polypeptide=Lus10020413 locus=Lus10020413.g ID=Lus10020413.BGIv1.0 annot-version=v1.0 ATGGCGAAGACTGGAGTGCTGGATTCCGACCCGACCCAGATGGCGGCGAGAGCCGACGCGCTGAAGAAGGAGCTCCAGAAGCTAGTCAACAGCATTGTCG ACGCCTCCGGCGACGATTACTCTCTGCACGCCATCGATCAGGCCGCCGCCACTCTCAAGGAGCTTCTCAAGCTGAAATCCGGCAAGAAAAAGAAATCGCC TCTTTCAATCACCGACGGGGTGTCCCCTTCGCCGGCGCCGGCGAGTAGTTGTCCGGAGAATTTCAAATGCCCTCTTTCCAATGAGCTCATGAGAGATCCC GTGATTCTCTCCACTGGACTGACTTATGACAGACCATTCATAGTAAATTGGCTGGAATCAGGCAACAGAACTTGCCCTAAATCGAAGCAAGTCCTTTCGC ATTCGACACTCACTCCGAATCACTTGATCAGGGAGATGATCTCGCAATGGTGCAATAGCCACGGTTTCGATTTGCCTGATCCGATTCATTACTCCAACGA TGGAGGAGGCGCAATAACAGAAGCTGATCGAAACCGATTTCATTCCTTGCTTAAGAAGTTAGCCCCCTCGGAGGGGATAGTGGCAGTATCCGAGCAGAAG GAAGCAGCTAAGGAGCTGAGACAGCTGACGAAAAGGATGCCTTCATTTCGAGCATTGTTCTCCGAATCCGATGGTGCACCGATCCCCCAGTTACTCTCCA CACTCGATCACAATTCCGATCTCGATCCTGATCTCCAAGAAAATGTCATCACAACACTGTTGAACCTGTCGATCCACGACAACAACAAGAAGCTAGTAAC CAAGACTCCCATCGCGATCCCTATACTCATCGATGCGTTACGAGCTTCAAAAATCGAGATAAGGACCAATGCTGCAGCTACATTGTTCACATTGTCGGCG CTTGATTCCAACAAGGAGCTTATAGGAAAATCCGGTGCACTGAAGCCTTTGTTCGATCTATTGGAAGAAGGAGATTCCTTAGCGATGAAAGATTCCGCGG CTGCGATTTTCAATCTCTGCATTGTTCAGGAGAACCGGGCGAGGGCAGTCAAAGAAGGCGGTGTTAGAGTGATTCTGAAGAAGATAACGGAAGGCGTTCT GGTTAACGAGCTTTTGTCGATTCTCGCTACATTATGTAGCTGTCCCGGGGCGATCGTGGAGATAGGGGAGCTCGAGGGGGTGGCTCGGTTGTTGAGGATC GTGAGGGAGAGCGTGAGCGAACGGAGCAAGGAGAATGCAATTGCGATTCTTTACACGGTTTGCTGCTATGATCGGAGCAAGTTGAAGGAAGTGAAGGAGG AAGAGAATTTGTGTGGGAGTATCTCGAAGCTTGCTAAGGAAGGTACTTCGAGGGCTAAGAGGAAGGCGAGTAGCATTCTCGAGAGGTTTAACAGGGCGGT CAGCCGTACACATACAGCATGA
AA sequence Show only first row Show all	>Lus10020413 pacid=23144121 polypeptide=Lus10020413 locus=Lus10020413.g ID=Lus10020413.BGIv1.0 annot-version=v1.0 MAKTGVLDSDPTQMAARADALKKELQKLVNSIVDASGDDYSLHAIDQAAATLKELLKLKSGKKKKSPLSITDGVSPSPAPASSCPENFKCPLSNELMRDP VILSTGLTYDRPFIVNWLESGNRTCPKSKQVLSHSTLTPNHLIREMISQWCNSHGFDLPDPIHYSNDGGGAITEADRNRFHSLLKKLAPSEGIVAVSEQK EAAKELRQLTKRMPSFRALFSESDGAPIPQLLSTLDHNSDLDPDLQENVITTLLNLSIHDNNKKLVTKTPIAIPILIDALRASKIEIRTNAAATLFTLSA LDSNKELIGKSGALKPLFDLLEEGDSLAMKDSAAAIFNLCIVQENRARAVKEGGVRVILKKITEGVLVNELLSILATLCSCPGAIVEIGELEGVARLLRI VRESVSERSKENAIAILYTVCCYDRSKLKEVKEEENLCGSISKLAKEGTSRAKRKASSILERFNRAVSRTHTA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10020413 [exp]	0	1
AT2G34560			P-loop containing nucleoside t...		Lus10038499 [exp]	1.0	0.8925
AT1G75060			unknown protein		Lus10018805 [exp]	1.7	0.8661
AT4G33670			NAD(P)-linked oxidoreductase s...		Lus10012456 [exp]	2.0	0.8758
AT5G54980			Uncharacterised protein family...		Lus10034604 [exp]	2.8	0.8619
AT4G31050			Biotin/lipoate A/B protein lig...		Lus10025664 [exp]	3.2	0.8290
AT4G33625			unknown protein		Lus10007070 [exp]	3.9	0.8567
AT3G06740	GATA	GATA15	GATA transcription factor 15 (...		Lus10037721 [exp]	6.9	0.7886
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10028421 [exp]	8.5	0.8376
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10036802 [exp]	8.8	0.8416
AT2G41990			unknown protein		Lus10003341 [exp]	9.5	0.8215

Compare expression of checked genes

Lus10020413 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.